Pairwise Alignments

Query, 673 a.a., RNA polymerase sigma factor RpoD, C-terminal domain from Sphingomonas koreensis DSMZ 15582

Subject, 617 a.a., RNA polymerase sigma factor, sigma-70 family from Pseudomonas stutzeri RCH2

 Score =  511 bits (1317), Expect = e-149
 Identities = 303/658 (46%), Positives = 402/658 (61%), Gaps = 57/658 (8%)

Query: 25  EGSIKKLVARAKKRGYITVDQLNEMLPQDQFTTDQIEDVMSALSDMGVNVVENEDVGEDE 84
           +  +K+L+ R +++GY+T  ++N+ LP+D    +Q+ED++  ++DMG+NV E   V  D 
Sbjct: 8   QSRLKELIQRGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFE---VAPDA 64

Query: 85  QPEDDTPDEVDSSDKDDEPFEIAKKKETVDRTDDPVRMYLREMGAVELLSREGEIAIAKR 144
                   + D +  ++    +A  +  + RT DPVRMY+REMG VELL+REGEI IAKR
Sbjct: 65  DALLLAEADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIEIAKR 124

Query: 145 IEAGRDTMILGLCESPITFNAIIGWSDALNEGTMQLREILDLDAMLSKGPSAEQVEGAED 204
           IE G   ++  +   P T ++I+   + +     +L +IL                    
Sbjct: 125 IEEGIREVMSAIAHFPGTVDSILADYERVTTEGGRLSDIL-------------------- 164

Query: 205 DDSGEISEKTAGASFKEEEEPEE-------ASADEDDELTERRAPRISDEEEEDNTLSLA 257
             SG I     GA+  +E EPE        A+ D+DDE  E      SD EEE+      
Sbjct: 165 --SGYIDPDDDGAAAPQEVEPEAPQTAAKPAADDKDDEDEED-----SDTEEEEGDGGPD 217

Query: 258 QMEETLKPQAL-ERFANITSIYKKFSKVQQQRLDAMAAGGELTAADEKKYHKLREELTAE 316
                L+  A+ E+        KK  +  QQ ++ +                  E L   
Sbjct: 218 PEVARLRFGAVAEQLEKANKALKKHGRASQQAVEEL------------------EALAIL 259

Query: 317 VESVQFHQAKIEYLVDQLYSFNRRLTALGGQMLRLAERH-KVNRKDFLDRYMGHELDESF 375
              ++    + + LV+++ +   ++ A    +++L  R  ++ R DFL ++  +E +  +
Sbjct: 260 FMPIKLVPKQYDALVERVRNALNQIRAQERAIMQLCVRDARMPRADFLRQFPSNETNLDW 319

Query: 376 IASVEKLDKKWAAFAANEGAAVDRIRVEVSEISQQTGMALTEFRRIVNMVQKGEREARIA 435
              +     K+A    N    + R +  + E+ Q+  +A+ + + I   +  GE +AR A
Sbjct: 320 AEQLASGKGKYAEAIGNRKEDIQRCQQMLIELEQECSLAIADIKDINRRMSIGEAKARRA 379

Query: 436 KKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI 495
           KKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI
Sbjct: 380 KKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI 439

Query: 496 RQAITRSIADQARTIRIPVHMIETINKLVRTSRQFLHEQGREPTPEEMAERLSMPLEKVR 555
           RQAITRSIADQARTIRIPVHMIETINKL R SRQ L E GREPTPEE+ ER+ MP +K+R
Sbjct: 440 RQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMEMPEDKIR 499

Query: 556 KVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPVDAAIQANLKETVTRVLASLTPRE 615
           KV+KIAKEPIS+ETPIGD+EDSHLGDFIED     P+D A   +LKE    VL+ LT RE
Sbjct: 500 KVLKIAKEPISMETPIGDDEDSHLGDFIEDSAMQSPIDVATVESLKEATREVLSGLTARE 559

Query: 616 ERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRSFLDQ 673
            +VLRMRFGI MNTDHTLEEVG+QF VTRERIRQIEAKALRKL+HP+RS  +RSFLD+
Sbjct: 560 AKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSEHLRSFLDE 617