Pairwise Alignments

Query, 673 a.a., RNA polymerase sigma factor RpoD, C-terminal domain from Sphingomonas koreensis DSMZ 15582

Subject, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

 Score =  524 bits (1350), Expect = e-153
 Identities = 311/656 (47%), Positives = 411/656 (62%), Gaps = 43/656 (6%)

Query: 25  EGSIKKLVARAKKRGYITVDQLNEMLPQDQFTTDQIEDVMSALSDMGVNVVENEDVGEDE 84
           +  +K+LV R K++GY+T  ++N+ LP +   ++Q+ED++  ++DMG+ VVE     +D 
Sbjct: 6   QSQLKQLVLRGKEQGYLTYAEVNDHLPAEIVDSEQVEDIIQMINDMGIKVVETAPDADDL 65

Query: 85  QPEDDTPDEVDSSDKDDEPFEIAKKKETVDRTDDPVRMYLREMGAVELLSREGEIAIAKR 144
              DDT    D    +     ++  +  + RT DPVRMY+REMG VELL+REGEI IAKR
Sbjct: 66  ALSDDTTI-TDEDAAEAAAAALSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKR 124

Query: 145 IEAGRDTMILGLCESPITFNAIIGWSDALNEGTMQLREIL----DLDAMLSKGPSAEQVE 200
           IE G + +   + E P T   I+   D +    ++L +++    D + M ++ P+A  + 
Sbjct: 125 IEDGINQVQSAIAEYPGTIPYILEQFDRVQAEELRLTDLISGFVDPNDMETEAPTATHI- 183

Query: 201 GAEDDDSGEISEKTAGASFKEEEEPEEASADEDDELTERRAPRISDEEEEDNTLSLAQME 260
                   E+SE                 ADEDD + E       ++E+ D   S ++ E
Sbjct: 184 ------GSELSEADL--------------ADEDDAVVEDEDE--DEDEDGDGESSDSEEE 221

Query: 261 ETLKPQ-ALERFANITSIYKKFSKVQQQRLDAMAAGGELTAADEKKYHKLREELTAEV-E 318
             + P+ A E+F  +        K Q  +L     G +   A E        +L  ++  
Sbjct: 222 VGIDPELAREKFNELRG------KFQNLQLAVNEFGRDSHQASEAS------DLVLDIFR 269

Query: 319 SVQFHQAKIEYLVDQLY-SFNRRLTALGGQMLRLAERHKVNRKDFLDRYMGHELDESFIA 377
             +    + ++LV+ L  S +R  T     M  + E  K+ +K F+  + G+E +E ++ 
Sbjct: 270 EFRLTPKQFDHLVETLRTSMDRVRTQERLVMKAVVEVAKMPKKSFIALFTGNESNEEWLD 329

Query: 378 SVEKLDKKWAAFAANEGAAVDRIRVEVSEISQQTGMALTEFRRIVNMVQKGEREARIAKK 437
            V   DK + A    +   + R   ++  I Q+T +++   + I   +  GE +AR AKK
Sbjct: 330 KVLASDKPYVAKVREQEEEIRRSIQKLQMIEQETSLSVERIKDISRRMSIGEAKARRAKK 389

Query: 438 EMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQ 497
           EMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQ
Sbjct: 390 EMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQ 449

Query: 498 AITRSIADQARTIRIPVHMIETINKLVRTSRQFLHEQGREPTPEEMAERLSMPLEKVRKV 557
           AITRSIADQARTIRIPVHMIETINKL R SRQ L E GREP PEE+AER+ MP +K+RKV
Sbjct: 450 AITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPLPEELAERMQMPEDKIRKV 509

Query: 558 MKIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPVDAAIQANLKETVTRVLASLTPREER 617
           +KIAKEPIS+ETPIGD+EDSHLGDFIED    +P+D+A   +LK     VLA LTPRE +
Sbjct: 510 LKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATATSLKAATRDVLAGLTPREAK 569

Query: 618 VLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRSFLDQ 673
           VLRMRFGI MNTDHTLEEVG+QF VTRERIRQIEAKALRKL+HPSRS  +RSFLD+
Sbjct: 570 VLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDE 625