Pairwise Alignments

Query, 673 a.a., RNA polymerase sigma factor RpoD, C-terminal domain from Sphingomonas koreensis DSMZ 15582

Subject, 684 a.a., RNA polymerase sigma factor RpoD from Sinorhizobium meliloti 1021

 Score =  820 bits (2118), Expect = 0.0
 Identities = 432/679 (63%), Positives = 530/679 (78%), Gaps = 18/679 (2%)

Query: 8   DDGDTTETG--DAPLIDLNEGSIKKLVARAKKRGYITVDQLNEMLPQDQFTTDQIEDVMS 65
           ++ D    G  D PL+DL++ ++KK++  AKKRGY+T+D+LN +LP ++ T++QIED MS
Sbjct: 9   EEADVEREGAPDGPLLDLSDDAVKKMIKAAKKRGYVTMDELNSVLPSEEVTSEQIEDTMS 68

Query: 66  ALSDMGVNVVENEDVGEDEQPEDDT-PDEVDSSDKDDEP-----FEIAKKKETVDRTDDP 119
            LSDMG+NV+E+E+  E    +DD   DE +S   +  P        +KKKE  DRTDDP
Sbjct: 69  MLSDMGINVIEDEEAEEAAASDDDDGADEGESEGGELAPASGTALAASKKKEPTDRTDDP 128

Query: 120 VRMYLREMGAVELLSREGEIAIAKRIEAGRDTMILGLCESPITFNAIIGWSDALNEGTMQ 179
           VRMYLREMG+VELLSREGEIAIAKRIEAGR+TMI GLCESP+TF A+I W D LNEG   
Sbjct: 129 VRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQALIIWRDELNEGQTL 188

Query: 180 LREILDLDAMLSKGPSAEQVEGAEDDDSGEISEKTAGASFKEEEEPEEASADEDDELT-- 237
           LREI+DL+   S GP A+     +  +  E   K A    ++E+     +A  DD++T  
Sbjct: 189 LREIIDLETTYS-GPEAKAAPQFQSPEKIEADRKAAE---EKEKVRRTRTAANDDDITNV 244

Query: 238 --ERRAPRISDEEEEDNTLSLAQMEETLKPQALERFANITSIYKKFSKVQQQRLDA-MAA 294
             E +AP   +E+++++ LSLA ME  L+PQ +E    I   YKK  K+Q Q+++A +AA
Sbjct: 245 GGEGQAPEEEEEDDDESNLSLAAMEAELRPQVMETLDVIAETYKKLRKLQDQQVEARLAA 304

Query: 295 GGELTAADEKKYHKLREELTAEVESVQFHQAKIEYLVDQLYSFNRRLTALGGQMLRLAER 354
            G L+ A E++Y +L++EL   V+S+  +Q +I+ LV+QLY  ++RLT   G++LRLAE 
Sbjct: 305 TGTLSPAQERRYKELKDELIKAVKSLSLNQNRIDALVEQLYDISKRLTQNEGRLLRLAES 364

Query: 355 HKVNRKDFLDRYMGHELDESFIASVEKL-DKKWAAFAANEGAAVDRIRVEVSEISQQTGM 413
           + V R+ FL++Y G ELD +++ S+  L  K W  FA  E   +  IR E+  ++ +TG+
Sbjct: 365 YGVKREAFLEQYSGAELDPNWMKSISNLAGKGWKEFARAENQTIRDIRQEIQNLATETGI 424

Query: 414 ALTEFRRIVNMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLM 473
           ++ EFRRIV+MVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLM
Sbjct: 425 SIAEFRRIVSMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLM 484

Query: 474 KAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTSRQFLHE 533
           KAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK+VRTSRQ LHE
Sbjct: 485 KAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHE 544

Query: 534 QGREPTPEEMAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPVD 593
            GREPTPEE+AE+L+MPLEKVRKV+KIAKEPISLETP+GDEEDSHLGDFIEDKNA++P+D
Sbjct: 545 IGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNALLPID 604

Query: 594 AAIQANLKETVTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAK 653
           AAIQANL+ET TRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAK
Sbjct: 605 AAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAK 664

Query: 654 ALRKLKHPSRSRKMRSFLD 672
           ALRKLKHPSRSRK+RSFLD
Sbjct: 665 ALRKLKHPSRSRKLRSFLD 683