Pairwise Alignments

Query, 673 a.a., RNA polymerase sigma factor RpoD, C-terminal domain from Sphingomonas koreensis DSMZ 15582

Subject, 696 a.a., Sigma 70 (RpoD) (NCBI) from Rhodospirillum rubrum S1H

 Score =  772 bits (1994), Expect = 0.0
 Identities = 427/687 (62%), Positives = 501/687 (72%), Gaps = 36/687 (5%)

Query: 14  ETGDAPLIDLNEGSIKKLVARAKKRGYITVDQLNEMLPQDQFTTDQIEDVMSALSDMGVN 73
           E GD+PL+D    ++KKLV R K RGYIT D+LN  LP D  +++QIED M+ LSDMG+N
Sbjct: 17  EGGDSPLLDSMNAAVKKLVNRGKDRGYITYDELNNALPPDDVSSEQIEDTMAMLSDMGIN 76

Query: 74  VVENEDVGED------EQPEDDTPDEVDSSDKDDEPFEIAKKKETVDRTDDPVRMYLREM 127
           VVE+E+ GE       E  E++   EV ++    E        + + RTDDPVRMYLREM
Sbjct: 77  VVEDEEEGEASAAPPAEAGEEEPGREVAATGNVSE--------DDIGRTDDPVRMYLREM 128

Query: 128 GAVELLSREGEIAIAKRIEAGRDTMILGLCESPITFNAIIGWSDALNEGTMQLREILDLD 187
           G+VELLSREGEIAIAKRIEAGR+ MI G+CESP+T  A++ W DAL +G M LR+I+DLD
Sbjct: 129 GSVELLSREGEIAIAKRIEAGREMMIGGICESPLTIRALLQWHDALVDGRMLLRDIIDLD 188

Query: 188 AMLSKGPSAEQV-EGAEDD--DSGEISEKTAGASFKEEEEPEEA--------SADEDDEL 236
           A    G   + V EG ED       ++   A A  KE +E EEA        S DED+  
Sbjct: 189 ATYGSGAGPDVVAEGLEDSVVPLSPLALSPARALPKEADEAEEAVTPGRDDDSEDEDEGD 248

Query: 237 TERRAPRISDEEE----------EDNTLSLAQMEETLKPQALERFANITSIYKKFSKVQQ 286
             + A    DEE            +N +SLA ME+ L P+ LE F +I + Y K  K Q 
Sbjct: 249 DAKPADGAGDEEAAPSGEDEGDGSENNVSLAAMEQELMPRVLETFEHIATTYGKLKKAQD 308

Query: 287 QRLDAMAAGGELTAADEKKYHKLREELTAEVESVQFHQAKIEYLVDQLYSFNRRLTALGG 346
           QR+ A+  G E  AA E+KY KL+ EL   +E V  + A+IE LV+QL + N+ L    G
Sbjct: 309 QRIAALQKGEEPGAALERKYDKLKLELVGLMEDVHLNNARIEQLVEQLNALNKGLITQEG 368

Query: 347 QMLRLAERHKVNRKDFLDRYMGHELDESFIASVEKLDKK-WAAFAANEGAAVDRIRVEVS 405
           ++LRLAER K+ R +FLD Y G E+D S+   V  L  K W  F       +  IR  ++
Sbjct: 369 KLLRLAERAKIRRDEFLDHYFGREMDPSWREDVAALPGKGWRDFTTRFADEIKDIRGSIA 428

Query: 406 EISQQTGMALTEFRRIVNMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLI 465
           EI++++ + + EFRRIV+ VQKGEREA  AKKEM+EANLRLVISIAKKYTNRGLQFLDLI
Sbjct: 429 EIAERSLLPIPEFRRIVSTVQKGEREASRAKKEMIEANLRLVISIAKKYTNRGLQFLDLI 488

Query: 466 QEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVR 525
           QEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVR
Sbjct: 489 QEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVR 548

Query: 526 TSRQFLHEQGREPTPEEMAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIED 585
           TSRQ LHE GREPTPEE+AE+L MPLEKVRKV+KIAKEPISLETPIGDEEDSHLGDFIED
Sbjct: 549 TSRQMLHEIGREPTPEELAEKLQMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIED 608

Query: 586 KNAIIPVDAAIQANLKETVTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRE 645
           KNA+ P+DAAI +NL+ET TRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRE
Sbjct: 609 KNAVQPLDAAINSNLRETCTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRE 668

Query: 646 RIRQIEAKALRKLKHPSRSRKMRSFLD 672
           RIRQIEAKALRKLKHPSRSRK+RSFLD
Sbjct: 669 RIRQIEAKALRKLKHPSRSRKLRSFLD 695