Pairwise Alignments

Query, 674 a.a., Type IV secretory pathway, VirD4 components from Sphingomonas koreensis DSMZ 15582

Subject, 605 a.a., bacterial conjugation protein, ATP binding domain trwB from Caulobacter crescentus NA1000

 Score = 47.8 bits (112), Expect = 2e-09
 Identities = 92/379 (24%), Positives = 153/379 (40%), Gaps = 47/379 (12%)

Query: 146 HVMAFAPTRSGKGVGL--VVPTLLSWTGSTVVHDIKGENWTLTAGWRSRFSHCLLFNPTD 203
           H+     T SGK   L  ++  +     + +V+D  GE   ++  +R      +L N  D
Sbjct: 184 HIALIGTTGSGKTTTLRQMLDAIDKRGDTAIVYDTSGE--FISHYYRPERGDIIL-NAFD 240

Query: 204 PRSARYNPLLEVRRGADEVRDVQNIADILVDPEGALERRNHWEKTSHALLVGAILHILYA 263
            R A ++P  E+   AD      +IA  LV   GA E+ + W   +  +LV  +L  L+A
Sbjct: 241 ARGAFWSPFDEIHHPAD----ADHIARQLVASTGAAEQ-DIWLDAAR-ILVADVLRKLHA 294

Query: 264 EEEKTLARVATFLSDPQRSFVATLRRMMSTNHLGTPETPRVHPVIASAARELLNKSENER 323
           E    L+           + + TL R+       + +  +      S+AR     +E   
Sbjct: 295 EGRTDLS-----------TLIETLGRL-------SRDQLKDWLADTSSARMFEQGAERAS 336

Query: 324 SGVL---STAMSFLGIYR-DPTVAEVTS-RCDWRIADLIDGERPVSLYLVIPPSD--ISR 376
             VL   +  +  L   R  P  A V S R  +   D   GERP   ++ +P  +   + 
Sbjct: 337 GSVLFMLARCVQLLQYLRASPEDATVFSFRAHFEALDQRTGERP---WIFVPRQEQYFAA 393

Query: 377 TKPLVRLVLNQIGRRLTERLEQRDATTRRHQLLMMLDEFPALGRLDFFETSLAFMAGYGI 436
            +PL+   L       T  L      +RR  + +MLDE   L ++D     L     +G 
Sbjct: 394 MRPLLACFLECAA---TAILGLSPHPSRR--IWLMLDELADLPKVDNLARLLPLGRKFGA 448

Query: 437 RAFLIAQSLNQIEKAYGEH--NSILDNCHVRVAFATNDERTAKRISDALGTA-TEQRAMR 493
              +  Q+L Q+ + YG+    ++L N + ++     D  T +  S A+GT  TE R   
Sbjct: 449 SVVVTFQALGQMRERYGKDGAEALLANTNTKLFLQLADPDTRQWASQAVGTVETEIRGAS 508

Query: 494 NYAGHRLAPWLAHVMVSRQ 512
               H++      +  SRQ
Sbjct: 509 ENLDHQVGKGRTSIGSSRQ 527