Pairwise Alignments

Query, 380 a.a., RNA polymerase sigma factor, sigma-70 family from Sphingomonas koreensis DSMZ 15582

Subject, 625 a.a., RNA polymerase sigma factor RpoD from Vibrio cholerae E7946 ATCC 55056

 Score =  163 bits (412), Expect = 1e-44
 Identities = 97/283 (34%), Positives = 169/283 (59%), Gaps = 13/283 (4%)

Query: 102 RQDEQRLGEAIQRGLAVTQTSEMPLDG--HTARLV----AKAKEARERLISSNIRLVVKL 155
           R+ E+ +  +IQ+   + Q + + ++     +R +    AKA+ A++ ++ +N+RLV+ +
Sbjct: 343 REQEEEIRRSIQKLQMIEQETSLSVERIKDISRRMSIGEAKARRAKKEMVEANLRLVISI 402

Query: 156 VMRPNFRYRMDVDDLVQYGMIGLMRAAEKFDPDVGTRFSTYATWWIRQAVTRGIHNDGNV 215
             +   R  +   DL+Q G IGLM+A +KF+   G +FSTYATWWIRQA+TR I +    
Sbjct: 403 AKKYTNR-GLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQART 461

Query: 216 IRLPVHVIASIHRFRRTQRQLGLTQGRREHVKLIAESLGWTDDYTARISLLSEMNVVSLD 275
           IR+PVH+I +I++  R  RQ+    GR    + +AE +   +D   ++  +++   +S++
Sbjct: 462 IRIPVHMIETINKLNRISRQMLQEMGREPLPEELAERMQMPEDKIRKVLKIAK-EPISME 520

Query: 276 APLGSDDGNGSTLGDLMADTA-DRPDEAVELLDIRAAVRSLVDDIQDERARDIVKRRFGF 334
            P+G D+   S LGD + DT  + P ++     ++AA R ++  +    A+ +++ RFG 
Sbjct: 521 TPIGDDE--DSHLGDFIEDTTLELPLDSATATSLKAATRDVLAGLTPREAK-VLRMRFGI 577

Query: 335 D-GPDETLQEIGDRYEVTRERIRQVEAKTLDKLEKRAIAKGLR 376
           D   D TL+E+G +++VTRERIRQ+EAK L KL   + ++ LR
Sbjct: 578 DMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLR 620