Pairwise Alignments

Query, 380 a.a., RNA polymerase sigma factor, sigma-70 family from Sphingomonas koreensis DSMZ 15582

Subject, 331 a.a., RNA polymerase, sigma 70 subunit, RpoD family from Marinobacter adhaerens HP15

 Score =  155 bits (391), Expect = 2e-42
 Identities = 97/253 (38%), Positives = 152/253 (60%), Gaps = 12/253 (4%)

Query: 131 ARLVAKAKEA-RERLISSNIRLVVKLVMRPNFRYRMDVDDLVQYGMIGLMRAAEKFDPDV 189
           ARL  K +E+ R+R+I SN+RLVVK+  R   R  + + DL++ G +GL+RA EKFDP+ 
Sbjct: 82  ARLARKGEESGRKRMIESNLRLVVKIARRYVNR-GLTLLDLIEEGNLGLIRAVEKFDPER 140

Query: 190 GTRFSTYATWWIRQAVTRGIHNDGNVIRLPVHVIASIHRFRRTQRQLGLTQGRREHVKLI 249
           G RFSTYATWWIRQ + R I N    IRLP+HV+  ++ + R  R+  LTQ + +H    
Sbjct: 141 GFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNLYLRAARE--LTQ-KLDHEPSA 197

Query: 250 AESLGWTDDYTARISLLSEMN--VVSLDAPLGSDDGNGSTLGDLMADT-ADRPDEAVELL 306
            E     D   A +  +  +N  V S+D P+G+  G   +L D +AD  A  P + ++  
Sbjct: 198 EEIARMVDKPVADVKRMLGLNERVASMDTPIGA--GGEKSLLDTVADEGASDPADLLQDN 255

Query: 307 DIRAAVRSLVDDIQDERARDIVKRRFGFDG-PDETLQEIGDRYEVTRERIRQVEAKTLDK 365
           ++ + +   +D + D++ ++++ RRFG  G P  TL+E+G    +TRER+RQ++ + L +
Sbjct: 256 NMCSCLEKWIDQLSDKQ-QEVLSRRFGLRGYPVSTLEEVGQEIGLTRERVRQIQVEALRR 314

Query: 366 LEKRAIAKGLRGN 378
           L +    +GL GN
Sbjct: 315 LREILEKEGLSGN 327