Pairwise Alignments

Query, 380 a.a., RNA polymerase sigma factor, sigma-70 family from Sphingomonas koreensis DSMZ 15582

Subject, 326 a.a., RNA polymerase sigma-38 factor (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  156 bits (395), Expect = 7e-43
 Identities = 95/240 (39%), Positives = 147/240 (61%), Gaps = 7/240 (2%)

Query: 138 KEARERLISSNIRLVVKLVMRPNFRYRMDVDDLVQYGMIGLMRAAEKFDPDVGTRFSTYA 197
           +++R R+I SN+RLVVK+  R N R  + + DL++ G +GL+RA EKFDP+ G RFSTYA
Sbjct: 84  EKSRNRMIESNLRLVVKIARRYNNR-GLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYA 142

Query: 198 TWWIRQAVTRGIHNDGNVIRLPVHVIASIHRFRRTQRQLGLTQGRREHVKLIAESLGWTD 257
           TWWIRQ + R I N    IRLP+HV+  ++ + RT R+L          + IAE L  + 
Sbjct: 143 TWWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRTARELAQKLDHEPTAEEIAEKLQVSS 202

Query: 258 DYTARISLLSEMNVVSLDAPLGSDDGNGSTLGDLMADTAD-RPDEAVELLDIRAAVRSLV 316
              +R+  L+E  + S+D PLG D  N   L D++AD  +  PD  V+  DI  +V   +
Sbjct: 203 VDVSRMLKLNE-KITSVDVPLGGD--NDKALLDVLADDDNVGPDYKVQDEDISNSVVKWL 259

Query: 317 DDIQDERARDIVKRRFGFDGPD-ETLQEIGDRYEVTRERIRQVEAKTLDKLEKRAIAKGL 375
           +++ + + R+++ RRFG  G +  TL+++G    +TRER+RQ++ + L +L     A+GL
Sbjct: 260 NEL-NTKQREVLARRFGLLGYEPSTLEDVGAEIGLTRERVRQIQVEALKRLRDLLGAQGL 318