Pairwise Alignments

Query, 380 a.a., RNA polymerase sigma factor, sigma-70 family from Sphingomonas koreensis DSMZ 15582

Subject, 616 a.a., RNA polymerase sigma-70 factor (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  156 bits (395), Expect = 1e-42
 Identities = 87/234 (37%), Positives = 145/234 (61%), Gaps = 7/234 (2%)

Query: 135 AKAKEARERLISSNIRLVVKLVMRPNFRYRMDVDDLVQYGMIGLMRAAEKFDPDVGTRFS 194
           AKA+ A++ ++ +N+RLV+ +  +   R  +   DL+Q G IGLM+A +KF+   G +FS
Sbjct: 373 AKARRAKKEMVEANLRLVISIAKKYTNR-GLQFLDLIQEGNIGLMKAVDKFEYRRGYKFS 431

Query: 195 TYATWWIRQAVTRGIHNDGNVIRLPVHVIASIHRFRRTQRQLGLTQGRREHVKLIAESLG 254
           TYATWWIRQA+TR I +    IR+PVH+I +I++  R  RQ+    GR    + +AE + 
Sbjct: 432 TYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPSPEELAERMM 491

Query: 255 WTDDYTARISLLSEMNVVSLDAPLGSDDGNGSTLGDLMADTA-DRPDEAVELLDIRAAVR 313
             +D   ++  +++   +S++ P+G D+   S LGD + DT  + P ++     +++A  
Sbjct: 492 MPEDKIRKVLKIAK-EPISMETPIGDDE--DSHLGDFIEDTTLELPLDSATSESLKSATH 548

Query: 314 SLVDDIQDERARDIVKRRFGFD-GPDETLQEIGDRYEVTRERIRQVEAKTLDKL 366
            ++  +    A+ +++ RFG D   D TL+E+G +++VTRERIRQ+EAK L KL
Sbjct: 549 EVLAGLTAREAK-VLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKL 601