Pairwise Alignments

Query, 380 a.a., RNA polymerase sigma factor, sigma-70 family from Sphingomonas koreensis DSMZ 15582

Subject, 590 a.a., RNA polymerase sigma-70 factor (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  153 bits (387), Expect = 1e-41
 Identities = 96/242 (39%), Positives = 143/242 (59%), Gaps = 7/242 (2%)

Query: 137 AKEARERLISSNIRLVVKLVMRPNFRYRMDVDDLVQYGMIGLMRAAEKFDPDVGTRFSTY 196
           A  A++ LI SN+RLVV +  +   R  +   DL+Q G IGLM+A +KF+   G +FSTY
Sbjct: 349 AMRAKQELIRSNLRLVVSIAKKYTNR-GLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTY 407

Query: 197 ATWWIRQAVTRGIHNDGNVIRLPVHVIASIHRFRRTQRQLGLTQGRREHVKLIAESLGWT 256
           ATWWIRQA+TR I +    IR+PVH+I +I++  RT R L    GR    + IAE + + 
Sbjct: 408 ATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQELGRDPTPEEIAERMDYP 467

Query: 257 DDYTARISLLSEMNVVSLDAPLGSDDGNGSTLGDLMAD-TADRPDEAVELLDIRAAVRSL 315
            D   ++  +++   +SL+ P+G  D   S+LGD + D  A  P E V    +   + S+
Sbjct: 468 IDKVKKVLKIAK-EPISLETPIG--DEEDSSLGDFIEDKKAVAPAEEVVNTKLGEQIASV 524

Query: 316 VDDIQDERARDIVKRRFGF-DGPDETLQEIGDRYEVTRERIRQVEAKTLDKLEKRAIAKG 374
           + D+   R   ++++RFG  +  D TL+E+G  + VTRERIRQ+EAK L KL     ++ 
Sbjct: 525 LADL-TPREEQVLRKRFGIGEKSDHTLEEVGKLFNVTRERIRQIEAKALRKLRHPVRSQT 583

Query: 375 LR 376
           LR
Sbjct: 584 LR 585