Pairwise Alignments

Query, 380 a.a., RNA polymerase sigma factor, sigma-70 family from Sphingomonas koreensis DSMZ 15582

Subject, 774 a.a., RNA polymerase sigma factor RpoD from Ralstonia sp. UNC404CL21Col

 Score =  158 bits (399), Expect = 6e-43
 Identities = 90/233 (38%), Positives = 141/233 (60%), Gaps = 7/233 (3%)

Query: 136 KAKEARERLISSNIRLVVKLVMRPNFRYRMDVDDLVQYGMIGLMRAAEKFDPDVGTRFST 195
           +A+EA+  +  +N+RLV+ +  +   R  +   DL+Q G IGLM+A +KF+   G +FST
Sbjct: 531 RAREAKREMTEANLRLVISIAKKYTNR-GLQFLDLIQEGNIGLMKAVDKFEYRRGYKFST 589

Query: 196 YATWWIRQAVTRGIHNDGNVIRLPVHVIASIHRFRRTQRQLGLTQGRREHVKLIAESLGW 255
           YATWWIRQA+TR I +    IR+PVH+I +I++  R  RQ+    G       +AE +  
Sbjct: 590 YATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGNEPDPATLAEKMEM 649

Query: 256 TDDYTARISLLSEMNVVSLDAPLGSDDGNGSTLGDLMADTAD-RPDEAVELLDIRAAVRS 314
            +D   +I  +++   +S++ P+G DD   S LGD + DT    P EA     +R  V+ 
Sbjct: 650 PEDKIRKIMKIAK-EPISMETPIGDDD--DSHLGDFIEDTNTLAPAEAALHGSMRGVVKD 706

Query: 315 LVDDIQDERARDIVKRRFGFD-GPDETLQEIGDRYEVTRERIRQVEAKTLDKL 366
           ++D +    A+ +++ RFG +   D TL+E+G +++VTRERIRQ+EAK L KL
Sbjct: 707 VLDSLTPREAK-VLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKL 758