Pairwise Alignments

Query, 380 a.a., RNA polymerase sigma factor, sigma-70 family from Sphingomonas koreensis DSMZ 15582

Subject, 681 a.a., RNA polymerase sigma factor RpoD from Burkholderia phytofirmans PsJN

 Score =  155 bits (393), Expect = 2e-42
 Identities = 109/333 (32%), Positives = 177/333 (53%), Gaps = 20/333 (6%)

Query: 42  DQAAVVERELLSAGVLIDEEDESDQEHEEGATATP-STTSPTFADALSHLMHQ-----AK 95
           D+   VER++L   V     D+      E     P S T   +AD +    H       +
Sbjct: 345 DEVRQVERQILHTVV-----DKCGMPRAEFIARFPGSETDLEWADKIVGEGHAYSAILTR 399

Query: 96  KLPLLSRQDEQRLGEAIQRGLAVTQTSEMPLDGHTARLVAKAKEARERLISSNIRLVVKL 155
            +P + R+ +QRL + +Q  + +        +   A    KA++A+  +  +N+RLV+ +
Sbjct: 400 NIPAI-REQQQRLLD-LQARVVLPLKDLKETNRQMAAGELKARQAKREMTEANLRLVISI 457

Query: 156 VMRPNFRYRMDVDDLVQYGMIGLMRAAEKFDPDVGTRFSTYATWWIRQAVTRGIHNDGNV 215
             +   R  +   DL+Q G IGLM+A +KF+   G +FSTYATWWIRQA+TR I +    
Sbjct: 458 AKKYTNR-GLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQART 516

Query: 216 IRLPVHVIASIHRFRRTQRQLGLTQGRREHVKLIAESLGWTDDYTARISLLSEMNVVSLD 275
           IR+PVH+I +I++  R  RQ+    G       +AE +   +D   +I  +++   +S++
Sbjct: 517 IRIPVHMIETINKMNRISRQILQETGLEPDPATLAEKMEMPEDKIRKIMKIAK-EPISME 575

Query: 276 APLGSDDGNGSTLGDLMAD-TADRPDEAVELLDIRAAVRSLVDDIQDERARDIVKRRFGF 334
            P+G DD   S LGD + D     P +A     +R  V+ ++D +    A+ +++ RFG 
Sbjct: 576 TPIGDDD--DSHLGDFIEDNNTVAPADAALHASMRDVVKDVLDSLTPREAK-VLRMRFGI 632

Query: 335 D-GPDETLQEIGDRYEVTRERIRQVEAKTLDKL 366
           +   D TL+E+G +++VTRERIRQ+EAK L KL
Sbjct: 633 EMSTDHTLEEVGKQFDVTRERIRQIEAKALRKL 665