Pairwise Alignments

Query, 380 a.a., RNA polymerase sigma factor, sigma-70 family from Sphingomonas koreensis DSMZ 15582

Subject, 665 a.a., RNA polymerase sigma factor RpoD from Burkholderia phytofirmans PsJN

 Score =  160 bits (404), Expect = 1e-43
 Identities = 107/333 (32%), Positives = 190/333 (57%), Gaps = 22/333 (6%)

Query: 43  QAAVVERELLS-----AGVLIDEEDESDQEHEE--GATATPSTTSPTFADALSHLMHQAK 95
           Q   +ER +L      +G+  ++  ES   HE   G T   +  + ++  AL       +
Sbjct: 331 QVRAIERNILQIVVSKSGMPREKFIESFAGHEADLGWTERAARGASSYGAALE------R 384

Query: 96  KLPLLSRQDEQRLGEAIQRGLAVTQTSEMPLDGHTARLVAKAKEARERLISSNIRLVVKL 155
            LP +  Q EQ+    I+  +++       ++       +K ++A+  +I +N+RLV+ +
Sbjct: 385 HLPAI--QSEQQKLIEIEATVSLPLKHLKEINRQMVAAESKMRKAKSEMIEANLRLVISI 442

Query: 156 VMRPNFRYRMDVDDLVQYGMIGLMRAAEKFDPDVGTRFSTYATWWIRQAVTRGIHNDGNV 215
             +   R  + +D L+Q G IGLM+A +KF+   G +FSTYATWW+RQAVTR + +    
Sbjct: 443 AKKYVNRGMLFLD-LIQEGNIGLMKAVDKFEYRRGWKFSTYATWWVRQAVTRSLADQART 501

Query: 216 IRLPVHVIASIHRFRRTQRQLGLTQGRREHVKLIAESLGWTDDYTARISLLSEMNVVSLD 275
           IR+PVH+I +I++  R  R++    G+  H  ++AE +  +++    I  +++   VS++
Sbjct: 502 IRVPVHMIETINKLNRISREILQQTGQEAHPSVLAERMELSEEKVRGILKIAK-QPVSME 560

Query: 276 APLGSDDGNGSTLGDLMADT-ADRPDEAVELLDIRAAVRSLVDDIQDERARDIVKRRFGF 334
            P+G DDG+ +TLGD++ D+ A  P +A    D+RAA+   +D +    A+ +++ R+G 
Sbjct: 561 TPVG-DDGD-ATLGDMIEDSAASSPADAAMQADLRAAIDDALDSLSPREAK-VLRMRYGI 617

Query: 335 D-GPDETLQEIGDRYEVTRERIRQVEAKTLDKL 366
           +   D TL+E+G +++VTRERIRQ+E+K + KL
Sbjct: 618 NTKSDHTLEEVGKQFDVTRERIRQIESKAMRKL 650