Pairwise Alignments

Query, 302 a.a., Site-specific recombinase XerD from Sphingomonas koreensis DSMZ 15582

Subject, 320 a.a., integron integrase from Vibrio cholerae E7946 ATCC 55056

 Score =  129 bits (323), Expect = 1e-34
 Identities = 99/309 (32%), Positives = 146/309 (47%), Gaps = 40/309 (12%)

Query: 21  MTMRRFSPETQRNYLRDVGRFATWLGRS-PHTASAEDVRQFQIEQQEAG-VPAPTMNSIV 78
           M  R ++ +T   YL  + R+  +  +  P     ++V +F       G V   T +  +
Sbjct: 13  MQTRYYAKKTIEAYLHWITRYIHFHNKKHPSLMGDKEVEEFLTYLAVQGKVATKTQSLAL 72

Query: 79  AALRFFFNHTLDRP-DLARKLVRTAHARKIPVVLTLGEVKRLLDATTCLKHQAALSVAYG 137
            +L F +   L  P  L  +  R+   RK+PVVLT  E++RLL+     KHQ  + + YG
Sbjct: 73  NSLSFLYKEILKTPLSLEIRFQRSQLERKLPVVLTRDEIRRLLEIVDP-KHQLPIKLLYG 131

Query: 138 AGLRVAEVSALKVSDVDSKRMVLRIERGKGGRYRNAMLPEGLLLLLRDWWRAARQQ---- 193
           +GLR+ E   L+V D+D     +RI +GKGG+ R   L + L   L++    A++     
Sbjct: 132 SGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQIALAKRYYDRD 191

Query: 194 -------GIMLPDG---------------WLFPGQNATVP----------ISTRQLYRVV 221
                  G+ LP                 +LFP    ++           ++   L + V
Sbjct: 192 LHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQKAV 251

Query: 222 VQAAEAADIAKRVGPHTLRHSFATHLLEDGVDIRVIQALLGHAKLNTTAFYTQVATRTMR 281
            ++A+ A I K V  HTLRHSFATHLLE G DIR +Q  LGH  + TT  YT V  R   
Sbjct: 252 RRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLDRGAS 311

Query: 282 AVVSPLDRL 290
            V+SPL RL
Sbjct: 312 GVLSPLSRL 320