Pairwise Alignments

Query, 160 a.a., RNA polymerase sigma factor, sigma-70 family from Sphingomonas koreensis DSMZ 15582

Subject, 181 a.a., RNA polymerase sigma factor 70 (ECF15 subgroup, ECF26 subgroup) from Phaeobacter inhibens DSM 17395

 Score = 79.7 bits (195), Expect = 2e-20
 Identities = 53/157 (33%), Positives = 86/157 (54%), Gaps = 11/157 (7%)

Query: 5   DELLLHLPRLRRFAHALARSSADADDLLQASVERALLKRDQWVPGTRLDSWMYRLMRNLW 64
           DEL+ HL  +R FA +L R++A ADDL+Q ++ +A    +++  G+ + +W++ ++RN +
Sbjct: 6   DELVDHLGAMRAFAISLTRNTAMADDLVQDTLVKAWTNIEKFEEGSNMRAWLFTILRNTY 65

Query: 65  IDTIRAETRRCET---FVAPQTGEIVGADGGQEMTVELGNVARAMRALPPEQREAVALVV 121
               R   R  E     ++ Q  +    DG     + + +   A   L  EQREA+ LV 
Sbjct: 66  YSLRRKRRREVEDADGVLSEQLSQKPDHDG----RLNMRDFNTAFAQLNDEQREALVLVG 121

Query: 122 IEGFAYKEAAAILEIPMGTLTSRLVRGREALMARLGE 158
             GF+Y+EAA    + +GT+ SR+ RGR    ARL E
Sbjct: 122 AGGFSYEEAAETCGVKVGTIKSRVNRGR----ARLAE 154