Pairwise Alignments

Query, 160 a.a., RNA polymerase sigma factor, sigma-70 family from Sphingomonas koreensis DSMZ 15582

Subject, 187 a.a., RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq) from Dinoroseobacter shibae DFL-12

 Score = 85.5 bits (210), Expect = 4e-22
 Identities = 49/148 (33%), Positives = 80/148 (54%), Gaps = 1/148 (0%)

Query: 5   DELLLHLPRLRRFAHALARSSADADDLLQASVERALLKRDQWVPGTRLDSWMYRLMRNLW 64
           DE++ HL  +R FA +L R+SA ADDL+Q ++ +A    D++  GT + +W++ ++RN +
Sbjct: 11  DEIVEHLSAMRAFAVSLTRNSATADDLVQDTLVKAWSNIDKFQAGTNMRAWLFTILRNTY 70

Query: 65  IDTIRAETRRCETFVAPQTGEIVGADGGQEMTVELGNVARAMRALPPEQREAVALVVIEG 124
               R   R  E         +       +  +++     A   LP EQREA+ LV   G
Sbjct: 71  YSLRRKRKREVEDTEGEMAAGL-AQKPDHDGRLQMREFGEAFAELPDEQREALILVGAGG 129

Query: 125 FAYKEAAAILEIPMGTLTSRLVRGREAL 152
           F+Y+EAA +  + +GT+ SR+ R R  L
Sbjct: 130 FSYEEAAEMCGVRIGTIKSRVNRARNKL 157