Pairwise Alignments

Query, 160 a.a., RNA polymerase sigma factor, sigma-70 family from Sphingomonas koreensis DSMZ 15582

Subject, 167 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 82.4 bits (202), Expect = 3e-21
 Identities = 58/163 (35%), Positives = 87/163 (53%), Gaps = 10/163 (6%)

Query: 1   LRFEDELLLHLPRLRRFAHALARSSADADDLLQASVERALLKRDQWVPGTRLDSWMYRLM 60
           L F  +L+     L RFA+ L     +A+DLLQ +  +AL   D+++P T    WMY +M
Sbjct: 4   LSFRKDLVGVQDELLRFAYKLTTDREEANDLLQETSLKALDNEDKYMPDTNFKGWMYTIM 63

Query: 61  RNLWIDTIRAETRRCETFVAPQTGEI----VGADGG---QEMTVELGNVARAMRALPPEQ 113
           RN++I+  R +  R +TF+  QT  +    +  D G    E T +L  + R + ALP E 
Sbjct: 64  RNIFINNYR-KVVRDQTFI-DQTDNLYHLNLPQDTGFESTERTYDLKEMHRVVNALPKEY 121

Query: 114 REAVALVVIEGFAYKEAAAILEIPMGTLTSRLVRGREALMARL 156
           R   A+ V  GF Y+E A  L +P+GT+ SR+   R+ L   L
Sbjct: 122 RVPFAMHV-SGFKYREIAEKLNLPLGTVKSRIFFTRQKLQEEL 163