Pairwise Alignments

Query, 160 a.a., RNA polymerase sigma factor, sigma-70 family from Sphingomonas koreensis DSMZ 15582

Subject, 167 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 78.6 bits (192), Expect = 5e-20
 Identities = 56/161 (34%), Positives = 86/161 (53%), Gaps = 10/161 (6%)

Query: 3   FEDELLLHLPRLRRFAHALARSSADADDLLQASVERALLKRDQWVPGTRLDSWMYRLMRN 62
           F  +L+     L RFA+ L     +A+DLLQ +  +AL   D+++P T    WMY +MRN
Sbjct: 6   FRKDLVGVQDELLRFAYKLTTDREEANDLLQETSLKALDNEDKYMPDTNFKGWMYTIMRN 65

Query: 63  LWIDTIRAETRRCETFVAPQTGEI----VGADGGQEMT---VELGNVARAMRALPPEQRE 115
           ++I+  R +  R +TFV  +T  +    +  D G E T    +L  + R + +LP E R 
Sbjct: 66  IFINNYR-KVVRDQTFV-DRTDNLYHLNLPQDTGFESTEKAYDLKEMHRVVNSLPKEYRV 123

Query: 116 AVALVVIEGFAYKEAAAILEIPMGTLTSRLVRGREALMARL 156
             A+ V  GF Y+E A  L +P+GT+ SR+   R+ L   L
Sbjct: 124 PFAMHV-SGFKYREIAEKLNLPLGTIKSRIFFTRQKLQEEL 163