Pairwise Alignments

Query, 160 a.a., RNA polymerase sigma factor, sigma-70 family from Sphingomonas koreensis DSMZ 15582

Subject, 167 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 72.0 bits (175), Expect = 4e-18
 Identities = 54/161 (33%), Positives = 82/161 (50%), Gaps = 10/161 (6%)

Query: 3   FEDELLLHLPRLRRFAHALARSSADADDLLQASVERALLKRDQWVPGTRLDSWMYRLMRN 62
           F  EL+     L RFA+ L     +A+DLLQ +  +AL   D+++  T    WMY +MRN
Sbjct: 6   FRKELVEAQDELLRFAYKLTMDIDEANDLLQETSLKALYNEDKYISDTNFRGWMYTIMRN 65

Query: 63  LWIDTIRAETRRCETFVAPQTGEI----VGADGGQEMT---VELGNVARAMRALPPEQRE 115
           ++I+  R   R  +TFV   T  +    +  D G E T    +L  + R + AL  E + 
Sbjct: 66  VFINNYRKVIRN-QTFV-DHTDNLYHLNLPQDAGFESTENAYDLKEMHRVVNALAKEYKI 123

Query: 116 AVALVVIEGFAYKEAAAILEIPMGTLTSRLVRGREALMARL 156
             A+  + GF Y+E A  L +P+GT+ SR+   R+ L   L
Sbjct: 124 PFAM-HLAGFKYREIADKLHLPLGTVKSRIFFIRKKLQEEL 163