Pairwise Alignments

Query, 160 a.a., RNA polymerase sigma factor, sigma-70 family from Sphingomonas koreensis DSMZ 15582

Subject, 167 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 80.9 bits (198), Expect = 1e-20
 Identities = 57/163 (34%), Positives = 89/163 (54%), Gaps = 10/163 (6%)

Query: 1   LRFEDELLLHLPRLRRFAHALARSSADADDLLQASVERALLKRDQWVPGTRLDSWMYRLM 60
           L F  +L+     L RFA+ L  +  +A+DLLQ +  +AL   +++VP T    WMY +M
Sbjct: 4   LSFRKDLIGVQEELLRFAYKLTANREEANDLLQETSLKALDNEEKYVPDTNFKGWMYTIM 63

Query: 61  RNLWIDTIRAETRRCETFVAPQTGEI----VGADGGQEMT---VELGNVARAMRALPPEQ 113
           RN++I+  R +  R +TFV  QT  +    +  D G E T    +L  + R + ALP E 
Sbjct: 64  RNIFINNYR-KIVRDQTFV-DQTDNLYHLNLPQDSGFESTEGAYDLKEMHRIVNALPKEY 121

Query: 114 REAVALVVIEGFAYKEAAAILEIPMGTLTSRLVRGREALMARL 156
           +   ++ V  GF Y+E A  L++P+GT+ SR+   R+ L   L
Sbjct: 122 KVPFSMHV-SGFKYREIAEKLDLPLGTVKSRIFFTRQRLQQEL 163