Pairwise Alignments

Query, 160 a.a., RNA polymerase sigma factor, sigma-70 family from Sphingomonas koreensis DSMZ 15582

Subject, 172 a.a., RNA polymerase subunit sigma-24 from Burkholderia phytofirmans PsJN

 Score =  105 bits (262), Expect = 4e-28
 Identities = 62/159 (38%), Positives = 95/159 (59%), Gaps = 5/159 (3%)

Query: 5   DELLLHLPRLRRFAHALARSSADADDLLQASVERALLKRDQWVPGTRLDSWMYRLMRNLW 64
           DEL+ H+PRLRR+A AL  +   ADDL+Q ++ERAL +   + PGT L +W++ +M N++
Sbjct: 5   DELMEHVPRLRRYARALINNRDLADDLVQDTLERALGRTGMFQPGTDLRAWLFTIMHNVF 64

Query: 65  IDTIRAETRRCETFVAPQTGEIVGAD----GGQEMTVELGNVARAMRALPPEQREAVALV 120
            +  R  + R    VA     +  ++      Q  ++E+ ++  A++ LP EQRE V LV
Sbjct: 65  ANQARKASARA-VHVAVDDESVSESEFAVPSEQTRSLEMRDLDYALQRLPMEQREVVLLV 123

Query: 121 VIEGFAYKEAAAILEIPMGTLTSRLVRGREALMARLGET 159
            +E  +Y + A  L IP+GT+ SRL RGRE L A +  T
Sbjct: 124 GLEEMSYADVALALNIPLGTVMSRLSRGRERLRALMAGT 162