Pairwise Alignments

Query, 676 a.a., Type IV secretory pathway, VirD4 components from Sphingomonas koreensis DSMZ 15582

Subject, 554 a.a., conjugal transfer protein TraG from Bifidobacterium breve UCC2003

 Score = 82.0 bits (201), Expect = 7e-20
 Identities = 119/504 (23%), Positives = 197/504 (39%), Gaps = 67/504 (13%)

Query: 90  AIFGSLWRARQQRHITT-----YGSARWASVREIDRAGLTGNAGVFLGRHHHHYLRHNGP 144
           A+ G  W  R+   +T      +GSA WA  R+I          +F+     H LR    
Sbjct: 70  AVAGLAWAYRRAARLTLRNGEEHGSAHWAGPRDIK---------LFIDPDPAHNLRFTRT 120

Query: 145 E-------------HVMAFAPTRSGKGVGLVVPTLLSWTGSALVHDIKGE---NWELTAG 188
           E             +V+    + SGK    V P LL    +  V D KGE   + E    
Sbjct: 121 ERLSTDTRRTLRNLNVLLLGSSGSGKTRYYVKPNLLGADMNWAVTDPKGELKRDTESPMK 180

Query: 189 WRSRFSHALLFNPTDI-RSAHYNPLIEVRRGEHEVRDVQNIADILVDPEGALERRN---H 244
            R    HAL  +  D+ RS  +NP+  +   E ++  ++   +++ +  G  +R+N    
Sbjct: 181 ARGYAVHAL--DLVDLTRSDRFNPMRYIDPAEPQLAILRLTDNLVTNATG--DRKNGDGF 236

Query: 245 WEKTSHSLLVGAILHVLYAEEEKTLARVATFLS-------DPQRPFT------------S 285
           WE    +LL   I  V Y E+E TL  V   L        D +R F             +
Sbjct: 237 WEDAEKALLSALIAWVHYTEDEPTLNHVTDMLDQMGASEQDEEREFIVDALFAETRVEIA 296

Query: 286 TLKRMMSTNHIGTKDAPQVHPVVASAAREVLNKSDNERSGVLSTAMSFLGLYRDPTVAEV 345
            ++         T+D  +      +     L  +   +  ++ T    L   +   V  +
Sbjct: 297 AMRAHEDDYDEQTRDMLEGLAFACAQYSMFLKGAGETKKSIIITTGVHLAPLQVREVRRI 356

Query: 346 TSRCDWRIADLVEAGRPVSLYLVVPPSDISRTKPLIRLILNQ-IGRRLTERLEVAGQGKG 404
            S  D  +  L E  R V  YL +P  D + T   +  +  Q +   L  + +    G+ 
Sbjct: 357 LSGDDIHLESLDEGKRVV--YLELP--DTNATFGFLASVFYQCLFETLVRKADHTDGGQL 412

Query: 405 KHQLLMMLDEFPALGRLDFFETALAFMAGYGIRAFLIAQSLNQIERAYGEH-NSILDNCH 463
              +  +LDEF  +G++  F   +A +   GI   +I Q+++Q +  Y +   +I  NC 
Sbjct: 413 GRDVHCLLDEFANIGKIPNFVRLIATIRSRGISCSIILQTVSQGKSLYRDDWETIAGNCD 472

Query: 464 VRVAFATNDERTARRISDALGTATEQRAMRNYAGHRLAPWLAHVMVSRQETARALLTPGE 523
             +    N+  T + ISD LG  T      +        W   V    ++ AR LLTP E
Sbjct: 473 SWLFLGGNEASTTKTISDRLGDQTIDVIETSETKGANGSWSRSV----RKNARKLLTPDE 528

Query: 524 VMQLPATDELVLVSGLAPIRAQKL 547
           + +L  +  + L+ G+ P  + KL
Sbjct: 529 LGRLDTSQCIYLLRGIPPFLSHKL 552