Pairwise Alignments

Query, 432 a.a., sugar ABC transporter substrate-binding protein from Herbaspirillum seropedicae SmR1

Subject, 424 a.a., ABC transporter for Lactose, periplasmic substrate-binding component (from data) from Sinorhizobium meliloti 1021

 Score = 47.0 bits (110), Expect = 1e-09
 Identities = 92/421 (21%), Positives = 150/421 (35%), Gaps = 72/421 (17%)

Query: 42  WAPDWAEEMQRVCDG-FMHEHPGVRINLQFMIGNSVEENLKP---RATTDSLPDIVSVN- 96
           W P++   + +     +   HP V  N+       VE+ L+      T D+LPDIV +  
Sbjct: 38  WDPNFNVAIMKEAGARYTKTHPDVTFNIVDFAKLDVEQKLQTGLSSGTADALPDIVLIED 97

Query: 97  --ASPYTASLADQGLLADLGQTRSWHGLLDILQREWTAPGGCRFGLPSGVATTLIYYHPD 154
             A  Y  S    G  A L  T  + G         T  G   +G+P     T +YY  D
Sbjct: 98  YGAQKYLQSFP--GAFAPLSGTVDYSGFAPYKVELMTLDGQV-YGMPFDSGVTGLYYRKD 154

Query: 155 LFERAGIQALPGD-----FEQFLAAGAAL-RRAGITPLALSGGFPNMLGNGPFSYGFANL 208
             E AG +  P D     +++F+  G  +  + G            M+G  P   G   +
Sbjct: 155 YLEAAGFK--PEDMQDLTWDRFIEIGKQVEEKTG----------KKMMGLDPNDAGLVRI 202

Query: 209 VASSTPDWRQHIANGTLALDNAQGWAVFSRLRTLMTRHLVQADCLRAGYDATLRQFAEGR 268
           +  S   W            NA   A    +  +M  ++ +      G+   +  F  G 
Sbjct: 203 IMQSAGQWYFDKEGKPNIAGNAALKAALETIGKIMQANIYKP---ANGWSDWVGTFTSGD 259

Query: 269 AAMTFQGSWAAGVLMQGRGQP-----VGVF-VPPWNDKDQPRQAVIGSETGFAIAQRISA 322
            A    G W  G +   + QP      GV  +P  + +     + +G  + + +    S+
Sbjct: 260 VATVVTGVWITGTV---KAQPDQSGNWGVAPIPALSIEGATHASNLGGSSWYVLE---SS 313

Query: 323 RHRQAAARFLDYLFGAGLPVWQGKRQNILPFKTPAPSAKGDAALFALAAGMARDAA---- 378
             +  A  FL+ ++   +  +Q   Q+          A G  +L A   G A +AA    
Sbjct: 314 EEKAEAIDFLNEIYAKDIDFYQKILQD--------RGAVG--SLLAARGGAAYEAADPFF 363

Query: 379 ------------ATGAPGLYYSYLPVNTIDVLHALLPAVLSGKTTPV-QAARALQESISA 425
                           P + Y          + A LPAV  G  TPV +  +A++  +SA
Sbjct: 364 GGEKVWQNFSDWLAKVPSVNYGIFTNEADLAVTAQLPAVTQG--TPVDEVLQAIEAEVSA 421

Query: 426 Q 426
           Q
Sbjct: 422 Q 422