Pairwise Alignments

Query, 432 a.a., sugar ABC transporter substrate-binding protein from Herbaspirillum seropedicae SmR1

Subject, 443 a.a., sugar ABC transporter substrate-binding protein from Bifidobacterium breve UCC2003

 Score = 43.5 bits (101), Expect = 1e-08
 Identities = 65/313 (20%), Positives = 114/313 (36%), Gaps = 44/313 (14%)

Query: 41  VWAPDWAEEMQRVCDGFMHEHPGVRINLQFMIGNSVEENLKPRATTDS---LPDIVSVNA 97
           VWA  W   ++     FM ++P +++      G+  +E +      ++    PDI  +  
Sbjct: 38  VWA--WDNNLKANAKQFMKDNPDIKVTFA-NAGSGKDEYVALSNAIEAGSGAPDIAQIE- 93

Query: 98  SPYTA--SLADQGLLADLGQTRSWHGLLDILQREWTAPG--GCRFGLPSGVATTLIYYHP 153
             Y A    A +G L DL    +           W++    G  +GLP        +Y  
Sbjct: 94  --YYAIPEYAIKGALKDLTDNGAGKFKDFYTPGTWSSVNYAGGIYGLPMDSGPMAFFYDK 151

Query: 154 DLFERAGIQALPGDFEQFLAAGAALRRAGITPLALSGGFPNMLGNGPFSYGFANLVA--- 210
           ++F++AGI   P  +++F      +R  G           + + N P   GF N +    
Sbjct: 152 EVFDKAGIDEPPATWDEFYEDAKKIRAVG-----------SYITNDPGDAGFFNAMVWQA 200

Query: 211 -----SSTPDWRQHIANGTLALDNAQGWAVFSRLRTLMTRHLVQADCLRAGYDATLRQFA 265
                S++ D +      T+ L    G   F++L   M    +     +   D   R   
Sbjct: 201 GGHPYSTSKDGK----TVTVNLTGDPGVRKFTKLWQKMIDEDLIETKTKGTSDDWYRAVG 256

Query: 266 EGRAAMTFQGSWAAGVLMQGRGQPVGVFVPPWNDKDQPRQAVIGSET----GFAIAQRIS 321
            G  A     +WA G+ +    +  G     W     P  +  G E     G ++A   S
Sbjct: 257 SGEFAGVITAAWAPGMFLNQASEGAG----KWRIAQMPAWSAGGHEVSESGGSSLAILSS 312

Query: 322 ARHRQAAARFLDY 334
           ++   AA +F+ Y
Sbjct: 313 SKKADAAYKFMAY 325