Pairwise Alignments

Query, 277 a.a., ABC transporter permease from Herbaspirillum seropedicae SmR1

Subject, 229 a.a., amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family from Pseudomonas stutzeri RCH2

 Score =  131 bits (330), Expect = 1e-35
 Identities = 78/226 (34%), Positives = 127/226 (56%), Gaps = 16/226 (7%)

Query: 15  PVFLHGAWLTLKMTTLAVIVGVAIGIFVAFAKNSPHRWLARGCSAYIEVVRNTPFLVQIF 74
           P F+ GAWLTL++  ++VI G+ + + +  A++S H  +      YI   R TP LVQ+F
Sbjct: 11  PSFIDGAWLTLQLVGVSVIAGLIVAVPLGIARSSRHLAVRALPYGYIFFFRGTPLLVQLF 70

Query: 75  LLYFGLASLGIRMPT---------FAAAVLAMIINIAAYAAEIIRAGLDSVPRGQIEAAQ 125
           L+Y+G+A   +   +         +  A++ M ++ AAY AEIIR  + +VP G+IEAA+
Sbjct: 71  LVYYGMAQFDVVRQSALWPYLRDPYWCAIITMTLHTAAYIAEIIRGAIQNVPHGEIEAAR 130

Query: 126 CLGLSVWRIRWHVMLQPAIERVYPALTSQFLLMMQASAMASQISAEELTAIANTVQSDTF 185
            LG+S  +   H++L  A     PA +++ +LM++ASA+AS I+  ELT +A  + + T+
Sbjct: 131 ALGMSRSQALLHIILPRATRIGLPAYSNEVILMLKASALASTITLLELTGMARKIAARTY 190

Query: 186 RSLETYLVVAALYLVLAILVKLVAYAIGETIFKRRRTLRRAAAQGR 231
              E +L    +YL       L+A+ + +      R LR  A QGR
Sbjct: 191 LHEEMFLTAGLIYL-------LIAFILMQGFKLLERWLRVDACQGR 229