Pairwise Alignments

Query, 505 a.a., D-ribose transporter ATP-binding protein from Herbaspirillum seropedicae SmR1

Subject, 525 a.a., monosaccharide ABC transporter ATP-binding protein, CUT2 family from Pseudomonas syringae pv. syringae B728a

 Score =  412 bits (1060), Expect = e-119
 Identities = 224/505 (44%), Positives = 315/505 (62%), Gaps = 11/505 (2%)

Query: 5   ADDSTAP-VLSLSGIGKRFQGVVALQDVGFTVRPGEVMALLGENGAGKSTLVKILTGIHQ 63
           A D+ AP +L +S + K F GVVAL DV   VRPG V+AL+GENGAGKSTL+KI+ GI+Q
Sbjct: 24  APDAQAPYLLEISHVSKGFPGVVALNDVQLRVRPGSVLALMGENGAGKSTLMKIIAGIYQ 83

Query: 64  PDEGSIHLGGREVRFASAQDAMRGGITAVHQETVMFEELSVAENIWIGRQPLCGTPRRID 123
           PD G I L G+ V F +   A++ GI  +HQE  +   +S+AENIWIGR+ L G    +D
Sbjct: 84  PDAGEIRLRGKPVSFDTPLSALQAGIAMIHQELNLMPFMSIAENIWIGREQLNGL-HMVD 142

Query: 124 WRRMEDEARALFARLEVDLPVRARVKDLSVAQRHFVEIARALSQQAQVVIMDEPTAALSH 183
            R M      L  RL + L     V  LS+A+R  VEIA+A+S  + V+IMDEPT+A++ 
Sbjct: 143 HREMHRCTAELLERLRIKLDPEELVGTLSIAERQMVEIAKAVSYNSDVLIMDEPTSAITE 202

Query: 184 HEIGELYRIIGQLRRAGTAVIFISHKFDEIYAVADRYTVLRDGRFIASGELADITEQQLV 243
            E+  L+ II  LR  G  +I+I+HK +E++ +AD   V RDG +I       +    L+
Sbjct: 203 TEVAHLFSIISDLRAQGKGIIYITHKMNEVFEIADEVAVFRDGAYIGLQRADSMDGDSLI 262

Query: 244 ALMVGREVGQVFSRAASNTEDQTAPVLEVKHLSHPSEFDDVSFAVRPGEILGFYGLVGAG 303
            +MVGRE+ Q+F        D    +L V  LS    F DVSF +R GE+LG  GL+G+G
Sbjct: 263 TMMVGRELTQLFPEREKPAGDV---LLSVNRLSLNGIFKDVSFDLRAGEVLGIAGLMGSG 319

Query: 304 RSEVMHALFGLSPEAQGAVWIDGREVKLCSPAQAIAHGLAYVPEDRQRQGALLSLPIFQN 363
           R+ V   LFG++P   G V  DG+ V +  P QAI  G A + EDR+  G    L + +N
Sbjct: 320 RTNVAETLFGITPSDSGEVRFDGKTVHIGDPHQAIELGFALLTEDRKLTGLFPCLSVMEN 379

Query: 364 ITLPVLP---GIGFFLRRHRRREIDIARRLCEQLELKASHFHQHVAQLSGGNQQKVVLAK 420
           + + VL    G GF  ++  R + +    +C++L +K     Q +  LSGGNQQK +LA+
Sbjct: 380 MEMAVLANYAGNGFVQQKALRSQCE---DMCKKLRVKTPSLEQCIDTLSGGNQQKALLAR 436

Query: 421 WLATQPRVLILDEPTKGIDIGSKAAVHRFIGELVAQGLAVILVSSELPEVMGMSDRIVVM 480
           WL T P+VLILDEPT+GID+G+K  ++R I  L ++G+AVI++SSELPEV+GMSDR++VM
Sbjct: 437 WLMTNPKVLILDEPTRGIDVGAKVEIYRLISLLASEGMAVIMISSELPEVLGMSDRVMVM 496

Query: 481 HQGRVQQVFSRAEASAEALAAAASG 505
           H+G +  +  R+EA+ E +   ASG
Sbjct: 497 HEGEMMGILDRSEATQEKVMHLASG 521



 Score = 93.2 bits (230), Expect = 2e-23
 Identities = 67/243 (27%), Positives = 116/243 (47%), Gaps = 13/243 (5%)

Query: 13  LSLSGIGKRFQGVVALQDVGFTVRPGEVMALLGENGAGKSTLVKILTGIHQPDEGSIHLG 72
           LSL+GI K         DV F +R GEV+ + G  G+G++ + + L GI   D G +   
Sbjct: 291 LSLNGIFK---------DVSFDLRAGEVLGIAGLMGSGRTNVAETLFGITPSDSGEVRFD 341

Query: 73  GREVRFASAQDAMRGGITAVHQE---TVMFEELSVAENIWIGRQPLCGTPRRIDWRRMED 129
           G+ V       A+  G   + ++   T +F  LSV EN+ +           +  + +  
Sbjct: 342 GKTVHIGDPHQAIELGFALLTEDRKLTGLFPCLSVMENMEMAVLANYAGNGFVQQKALRS 401

Query: 130 EARALFARLEVDLPVRARVKD-LSVAQRHFVEIARALSQQAQVVIMDEPTAALSHHEIGE 188
           +   +  +L V  P   +  D LS   +    +AR L    +V+I+DEPT  +      E
Sbjct: 402 QCEDMCKKLRVKTPSLEQCIDTLSGGNQQKALLARWLMTNPKVLILDEPTRGIDVGAKVE 461

Query: 189 LYRIIGQLRRAGTAVIFISHKFDEIYAVADRYTVLRDGRFIASGELADITEQQLVALMVG 248
           +YR+I  L   G AVI IS +  E+  ++DR  V+ +G  +   + ++ T+++++ L  G
Sbjct: 462 IYRLISLLASEGMAVIMISSELPEVLGMSDRVMVMHEGEMMGILDRSEATQEKVMHLASG 521

Query: 249 REV 251
            +V
Sbjct: 522 HKV 524