Pairwise Alignments

Query, 289 a.a., tRNA 2-thiocytidine biosynthesis protein TtcA from Herbaspirillum seropedicae SmR1

Subject, 248 a.a., conserved hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  117 bits (294), Expect = 2e-31
 Identities = 78/244 (31%), Positives = 123/244 (50%), Gaps = 10/244 (4%)

Query: 13  QKNIRRLTGR---AIADFDMIRDGDVIMACMSGGADSYTMLDTLRYLQSVAPVKFEIIAV 69
           +K IRR+  R    +  + +I +GD I+  +SGG DS  +++ L     +   +F +IAV
Sbjct: 8   EKTIRRIERRFNKGVVQYRLIEEGDKILIGLSGGKDSLALVELLGKRARIYKPRFSVIAV 67

Query: 70  NLDQKQPGFPE--HILPEYFERIGVRYRIVEEDTYSIVKDKIAPGKTTCSLCSRLRRGIL 127
           ++      +      L  Y +  GV + +  E ++    D     K+ C LCS  RR  L
Sbjct: 68  HVVMNNIPYQSDTEYLKAYCDSFGVPF-VQYETSFDPATDT---RKSPCFLCSWNRRKAL 123

Query: 128 YRVAKELGATKIALGHHRDDILHTFMLNMFYGGKIKTMPPKLIADDGENVVIRPLAYVRE 187
           + VAKE G  KIALGHH DDIL T ++N+ Y G   TMPP+L+    +  +IRP+  V E
Sbjct: 124 FTVAKEQGCNKIALGHHMDDILETLLMNITYQGAFSTMPPRLVMKKFDMTIIRPMCMVHE 183

Query: 188 PDIKKYAAAMQFPIIPCNLCGSQPNLQRQAMREMLNEWEKTNPLWIKSMFTAMGNIAPSH 247
            D+ + AA   +     N C  +    R  M+ +L + E  NP    S++ +M N+    
Sbjct: 184 ADLIELAALHDYRKQVKN-CPYESQSSRSDMKGILRQLEAMNPEARYSLWGSMTNVQEEL 242

Query: 248 MLDR 251
           + D+
Sbjct: 243 LPDK 246