Pairwise Alignments

Query, 338 a.a., ABC transporter permease from Herbaspirillum seropedicae SmR1

Subject, 328 a.a., ABC-type branched-chain amino acid transport system, permease component from Pseudomonas stutzeri RCH2

 Score =  160 bits (405), Expect = 4e-44
 Identities = 109/328 (33%), Positives = 178/328 (54%), Gaps = 13/328 (3%)

Query: 4   VNTPNTPNPSAMQPVLRLPNDRWTLLEILFWLLPVAAYFIFPDYLVLISQIMIVGLFAVS 63
           +N+  +  P+  +P+LRL      L+ I    L +A ++ +P +L+   +++   LFA +
Sbjct: 1   MNSQLSVTPATKRPLLRLET---VLILIGVIALALAPFYFYPIFLM---KVLCFALFACA 54

Query: 64  LDLILGYAGIVSLGHAAFFGLGAYTAGLLAVHGWG-EPITGLLLAAVVAAIAGFLVSFLV 122
            +L+LGY GI+S GHAAFFG  AY     AV  WG  P  G+L+    AA  G ++ FL 
Sbjct: 55  FNLLLGYTGILSFGHAAFFGGAAYFTA-HAVKEWGLTPELGILVGVAGAAFLGLIIGFLA 113

Query: 123 VRGADLTRLMVTLGIGLMLFEAANKAAFITGGVDGLSGMVMGKIFGVFEFDLNGRVAYGY 182
           +R   +   M+TL +  M F    +A+F T G DG+  +  G +FG+ + +      Y +
Sbjct: 114 IRRQGIYSTMITLALSQMFFFFCLQASF-THGEDGIQNIPRGHLFGLIDLE-EPLYMYFF 171

Query: 183 SFAVLLLLFVILRRLVNSPFGLGLRGIREGGRRMPAIGADVNRRLVVIFTVAAAVAGVAG 242
             +V L   +++ R+++SP+G+ LR IRE   R  ++G  V+R  +  F ++AA+AG+AG
Sbjct: 172 VLSVFLAGMLLIWRVIHSPYGMILRSIRENENRAISLGYSVSRYKLGAFVMSAALAGLAG 231

Query: 243 ALLAQTTQFVGLDVLGFPRSAELLIILVLGGTGRLYGGLVG-ALVYMLAQDYLSGLNPAY 301
            L A   QF  L  + +  S E++++ +LGG G L G + G ALV  L   + +   P  
Sbjct: 232 GLKALVFQFATLTDVSWQMSGEVVLMTLLGGIGTLVGPVFGAALVTTLGNYFATSELPV- 290

Query: 302 WQFWIGLLLIVIVLFARGGLLGGLAVLR 329
                G++ +V VL  R G++G L   R
Sbjct: 291 -TLVTGIIFMVCVLVFRRGMIGELYASR 317