Pairwise Alignments

Query, 265 a.a., chemotaxis protein CheY from Herbaspirillum seropedicae SmR1

Subject, 240 a.a., DNA-binding response regulator from Bifidobacterium breve UCC2003

 Score =  141 bits (356), Expect = 1e-38
 Identities = 93/240 (38%), Positives = 131/240 (54%), Gaps = 13/240 (5%)

Query: 28  TTAPPAAGALILIAEDAPEIAEILAAYLARNGMRSVHAADGARALELHLALKPDLVLLDI 87
           T     A   +L+ ED P +A  +A  +   G  +  A DGA A++  L LKPDLV++DI
Sbjct: 5   TARQNTAPRTVLVVEDEPTLATAIAQRITAEGWTARVAGDGASAVQAALQLKPDLVIMDI 64

Query: 88  QMPQVNGWQVLSQIRQRDNTPVILLTALDQDVDKLTGLRIGADDYVVKPFNPAEVVARVE 147
            +P ++G +   +I      PV++LTA D + DK+ GL  GADDY+ KPF+  E++AR +
Sbjct: 65  MLPVMDGLEATKRIVAERPVPVLILTARDDETDKVIGLGAGADDYMTKPFSMRELIARCK 124

Query: 148 AVLRR----SLPREERDDRQVLRVPPFVIDFEQHEVVAEIEGVSHTLVLTLTEFKLLAQL 203
           A+LRR     +  +  ++ ++L     VID  Q  V    E V     LT TEF LLA L
Sbjct: 125 ALLRRVERAKVIAKNSENEKILDFGSMVIDPAQRIVTVNGEQVH----LTPTEFDLLATL 180

Query: 204 ARAPRRVFSRAELLASCLPEGDTL-ERTVDSHVSKLRKKLEDLGIAGIPVSIRGVGYRFQ 262
           AR P+ V +R +LL       D    RTVDSHV  LR KL     A +  ++ GVGY F+
Sbjct: 181 ARRPKSVLTREKLLEEVWDWVDASGTRTVDSHVKALRHKLG----ADMIRTVHGVGYAFE 236