Pairwise Alignments

Query, 273 a.a., formamidopyrimidine-DNA glycosylase from Herbaspirillum seropedicae SmR1

Subject, 269 a.a., formamidopyrimidine-DNA glycosylase from Vibrio cholerae E7946 ATCC 55056

 Score =  228 bits (582), Expect = 8e-65
 Identities = 124/273 (45%), Positives = 165/273 (60%), Gaps = 6/273 (2%)

Query: 1   MPELPEVEVTRRGVAPHLEGRTVSGVVMRHSGLRWPFPVGLEALLRGRVIRSTGRRGKYL 60
           MPELPEVEV+R G++PHL G T+  +V+R   LRWP P  L+ L  G+ I +  RR KYL
Sbjct: 1   MPELPEVEVSRLGISPHLVGGTIQSLVLRTPKLRWPIPQELKQL-EGQTILAIHRRAKYL 59

Query: 61  LIHFDHGTLIVHLGMSGHLRILPPGIAPQKHDHFDLEV-GGQVMRMTDPRRFGAILWHDL 119
           +I    G+ IVHLGMSG LRIL       KHDH DL +  G+ +R  DPRRFGA LW   
Sbjct: 60  IIETAVGSAIVHLGMSGSLRILDGDFPAAKHDHVDLVMTSGKRLRYNDPRRFGAWLWC-- 117

Query: 120 ADGAVEEHLLLRSLGLEPLEEKFTARELFRQTRGRSAPIKQVLLAGDIVVGVGNIYASES 179
                E H +L  LG EPL E F A  +  + R +   +K  ++    VVGVGNIYA+ES
Sbjct: 118 --APDESHEVLGRLGPEPLTEAFNAEYMMDKARNKRIAVKAFIMDNAAVVGVGNIYANES 175

Query: 180 LFKARIHPKTAAGKISLPRYERLAQAIRETLAAAIEQGGSSLRDFIAVNGQSGYFQQNYF 239
           LF +R+HP   A  +SL  ++ L   I++ L  AI+QGG++L+DF   +G+ GYF Q   
Sbjct: 176 LFTSRLHPLRPAHSLSLEEWQTLVANIKQVLQVAIKQGGTTLKDFTQSDGKPGYFAQELQ 235

Query: 240 VYNRTGEACRICATPIRQIKQGQRSTFYCVSCQ 272
           VY +  + C  C  P+ + K  QR+TF+C  CQ
Sbjct: 236 VYGKAKQPCPHCGEPLCEQKIAQRNTFFCPQCQ 268