Pairwise Alignments

Query, 273 a.a., formamidopyrimidine-DNA glycosylase from Herbaspirillum seropedicae SmR1

Subject, 281 a.a., DNA-formamidopyrimidine glycosylase (NCBI) from Rhodospirillum rubrum S1H

 Score =  196 bits (498), Expect = 5e-55
 Identities = 123/279 (44%), Positives = 153/279 (54%), Gaps = 14/279 (5%)

Query: 1   MPELPEVEVTRRGVAPHLEGRTVSGVVMRHSGLRWPFPVGLEALLRGRVIRSTGRRGKYL 60
           MPELPEVE  R G+ P L G  +S V  R   LR P PV L   L G+V+ S  RR KYL
Sbjct: 1   MPELPEVETVRLGLTPALVGERLSRVAARRPALRLPIPVDLVQRLTGKVVGSLDRRAKYL 60

Query: 61  LIHFDHGTL-IVHLGMSGHLRILPPG--IAPQKHDH--FDLEVGGQVMRMTDPRRFGAIL 115
           L+    G + ++HLGMSG + + P      P  HDH  F+ E G +V    DPRRFG I 
Sbjct: 61  LLRMIDGPVALIHLGMSGSMTVGPLAGHAEPGPHDHILFETEAGLRVT-FRDPRRFGLIT 119

Query: 116 WHDLADGAVEEHLLLRSLGLEPLEEKFTARELFRQTRGRSAPIKQVLLAGDIVVGVGNIY 175
             +     +++H LL  LG EPL E F A  L R+  GR APIK  LL   +V G+GNIY
Sbjct: 120 LAE--PETLDDHPLLAKLGPEPLSEAFDAEVLVRRLNGRQAPIKAALLDQGVVAGLGNIY 177

Query: 176 ASESLFKARIHPKTAAGKISLPRYERLAQAIRETLAAAIEQGGSSLRDFIAVNGQSGYFQ 235
            SE+LF+A I P   A  ++    E L  AIR  L  AI  GGSSLRD    +G  GYFQ
Sbjct: 178 VSEALFRAGISPLRPAASVTGAWAEALVAAIRAVLGEAIAAGGSSLRDHRQTDGALGYFQ 237

Query: 236 QNYFVYNRTGEACRIC------ATPIRQIKQGQRSTFYC 268
             + VY+R G+ C  C         I ++ Q  RSTF+C
Sbjct: 238 HRFAVYDRVGQPCPGCDCDVARTGGIERMVQSGRSTFFC 276