Pairwise Alignments

Query, 285 a.a., nucleotide-binding protein from Herbaspirillum seropedicae SmR1

Subject, 282 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score =  214 bits (546), Expect = 1e-60
 Identities = 126/292 (43%), Positives = 183/292 (62%), Gaps = 21/292 (7%)

Query: 1   MRIVLITGISGSGKSVALHVLEDAGYFCVDNLPPSLLCDLVQTRIQEGASRLAVATDARS 60
           M++VL++G SGSGKSVAL VLED GY+CVDNLP  ++  L++ +++  +  +A++ D R+
Sbjct: 1   MKLVLVSGRSGSGKSVALRVLEDLGYYCVDNLPLQMMESLLE-QLKGRSDLVAISVDVRN 59

Query: 61  ADSLAT-LRHDIDQLRADGHDVKVFFLTASSETLITRFSETRRSHPLSHRLLPGGNPSDR 119
             S    L   + +L  D  ++  FFL +S   L+ R+SETRR HPLS           +
Sbjct: 60  MPSEEIQLEKQLAKLPKDT-EILSFFLNSSDNVLLKRYSETRRLHPLSR---------SK 109

Query: 120 LTLSECIELEKEMLADMQE-IGLVMDTSQLS----SNKLRGWIKDLVDLERSPLTLLIES 174
           ++L E I+LE ++L  + + +   +DTS L+    S+K+R  +   VD E   L +  ES
Sbjct: 110 VSLKEAIQLEGKLLDPIAKLVDHYIDTSNLNIYELSDKVREILLGTVDKE---LVINFES 166

Query: 175 FAFKHGLPLDADLVFDVRMLPNPHYDLALRPLTGRDQPVIDFLDADAEVAEMFNDIRRFV 234
           F FK+G+P +AD +FDVR LPNPH++  LRPLTG D+PV  FL     V +    I   +
Sbjct: 167 FGFKYGMPTEADFMFDVRFLPNPHWETELRPLTGLDEPVQQFLSQQPLVNKFIWQIENLL 226

Query: 235 EKWLPSFKGDNRSYLTVAIGCTGGQHRSVYLAERLASHF-RATEQVVCRHRQ 285
           E WLP  + +NRSYLT+AIGCTGGQHRSVY+ ++LA  F +   +V  RHR+
Sbjct: 227 ETWLPHLERNNRSYLTIAIGCTGGQHRSVYVTDQLAKLFNKGKHKVQARHRE 278