Pairwise Alignments

Query, 285 a.a., nucleotide-binding protein from Herbaspirillum seropedicae SmR1

Subject, 284 a.a., hypothetical protein (RefSeq) from Shewanella sp. ANA-3

 Score =  222 bits (566), Expect = 6e-63
 Identities = 128/293 (43%), Positives = 186/293 (63%), Gaps = 23/293 (7%)

Query: 1   MRIVLITGISGSGKSVALHVLEDAGYFCVDNLPPSLLCDLVQTRIQEGASRLAVATDARS 60
           M++V+++G SGSGKSVAL VLED GY+CVDNLP  L+  L++ +++     +A++ D R+
Sbjct: 1   MKLVIVSGRSGSGKSVALRVLEDLGYYCVDNLPLPLIGSLLE-QLKGSNDLVAISVDVRN 59

Query: 61  ADSLATLRHDIDQLRA--DGHDVKVFFLTASSETLITRFSETRRSHPLSHRLLPGGNPSD 118
                 +   + QL +  +G ++  FFL +S + L+ R+SETRR HPLS           
Sbjct: 60  LPEQDKVL--VKQLASLPEGTELTSFFLNSSDKVLLKRYSETRRLHPLS---------KS 108

Query: 119 RLTLSECIELEKEMLADM-QEIGLVMDTSQLSSNKLRGWIKDL----VDLERSPLTLLIE 173
           R++L E I+LE ++L  + Q++   +DTS L+  +L   ++ +    VD E   L +  E
Sbjct: 109 RVSLQEAIKLEGKLLEPLSQQMDHYIDTSNLNIYELSDQVRQILLGSVDKE---LVINFE 165

Query: 174 SFAFKHGLPLDADLVFDVRMLPNPHYDLALRPLTGRDQPVIDFLDADAEVAEMFNDIRRF 233
           SF FKHG+P +AD +FDVR LPNPH++  LRPLTG D+PV +FL+    V +    I   
Sbjct: 166 SFGFKHGMPTEADFMFDVRFLPNPHWEPELRPLTGLDEPVAEFLNRQPLVNKFIWQIENL 225

Query: 234 VEKWLPSFKGDNRSYLTVAIGCTGGQHRSVYLAERLASHF-RATEQVVCRHRQ 285
           +E WLP  + +NRSYLT+AIGCTGGQHRSVY+AE+LA  F     +V  RHR+
Sbjct: 226 LETWLPHLERNNRSYLTIAIGCTGGQHRSVYVAEQLAKRFSNGKHKVNARHRE 278