Pairwise Alignments

Query, 233 a.a., hypothetical protein from Herbaspirillum seropedicae SmR1

Subject, 272 a.a., alanine racemase domain protein (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  160 bits (404), Expect = 3e-44
 Identities = 104/242 (42%), Positives = 137/242 (56%), Gaps = 22/242 (9%)

Query: 11  VQQQIAAAAERAGRPAGAVQLLAVSKTFGPQAVLEAVRAGQRAFGENYLQEALEK---IA 67
           V+ ++  AA  AGR    V L+AVSK     +V     AGQR FGENY+QEAL K   +A
Sbjct: 27  VRARVDGAARAAGRDPAGVTLVAVSKFHPAASVAALSAAGQRDFGENYVQEALRKQAEVA 86

Query: 68  ALPLLAPDVPL----------QWHFIGPIQSNKTRPIAEHFDWVHSVDR----LKIAQRL 113
            +  + PD             +WHFIG +QSNK + +   F  +H+VD      K+ QRL
Sbjct: 87  DMTGMGPDAASGTKVAGGAAPRWHFIGHLQSNKAKDVVGRFALLHTVDSEALARKLDQRL 146

Query: 114 SEQRPAALGAL----NVCLQVNISGEDSKSGLDPAELPAVAAQVAQLPGLKLRGLMAIPA 169
           S       G +    ++ LQVNI  E+ KSG+DP +LPA+   V  LP L+L GLM +P 
Sbjct: 147 SGMPAQGAGGVAPGQDILLQVNIGDEEQKSGVDPDDLPALTDAVLALPRLRLLGLMCMPP 206

Query: 170 PSEDVTQQRAAFAAVRSLLAQLQAQ-GLALDTLSMGMSADLDAAVAEGASIVRIGSAIFG 228
             +D    R  FA +R L   L A+ GL L  LSMGMS D++ AVAEGA+IVR+G+ IFG
Sbjct: 207 IFDDGEASRPYFARLRELRDALSARVGLPLPHLSMGMSHDVEVAVAEGATIVRVGTDIFG 266

Query: 229 AR 230
            R
Sbjct: 267 PR 268