Pairwise Alignments

Query, 233 a.a., hypothetical protein from Herbaspirillum seropedicae SmR1

Subject, 224 a.a., conserved hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  129 bits (325), Expect = 4e-35
 Identities = 82/236 (34%), Positives = 134/236 (56%), Gaps = 21/236 (8%)

Query: 3   SIAQNLQHVQQQIAAAAERAGRPAGAVQLLAVSKTFGPQAVLEAVRAGQRAFGENYLQEA 62
           SIA NL+ V  ++         P G V+L+AVSK    +A+ EA +AGQR FGE+ +QE 
Sbjct: 2   SIADNLKQVLAEL---------PQG-VRLVAVSKFHPNEAIEEAYQAGQRIFGESKVQEM 51

Query: 63  LEKIAALPLLAPDVPLQWHFIGPIQSNKTRPIAEHFDWVHSVDRLKIAQRLSEQRPAALG 122
             K   LP       ++WHFIG +Q+NK + +  + + +H +D  K+   +++Q   A  
Sbjct: 52  TAKYETLPK-----DIEWHFIGHLQTNKIKYMIPYVEMIHGIDTYKLLAEVNKQAAKAGR 106

Query: 123 ALNVCLQVNISGEDSKSGLDPAELPAV--AAQVAQLPGLKLRGLMAIPAPSEDVTQQRAA 180
            +N  +Q++++ E++K G  P E   +  A +  +L  +++ GLM + + ++DV Q    
Sbjct: 107 IVNCLIQIHVAQEETKFGFSPEECKDMLHAGEWKELSHIRICGLMGMASNTDDVEQINRE 166

Query: 181 FAAVRSLLAQLQAQGLA-LDT---LSMGMSADLDAAVAEGASIVRIGSAIFGARHY 232
           F  +  L  +++A   A  DT   LSMGMS D   A+A G+++VR+GS IFG R+Y
Sbjct: 167 FCLLNRLFQEIKANWFADSDTFRELSMGMSHDYHEAIAAGSTLVRVGSKIFGERNY 222