Pairwise Alignments

Query, 881 a.a., DNA gyrase subunit A from Herbaspirillum seropedicae SmR1

Subject, 901 a.a., DNA gyrase subunit A (RefSeq) from Shewanella amazonensis SB2B

 Score = 1007 bits (2604), Expect = 0.0
 Identities = 517/902 (57%), Positives = 669/902 (74%), Gaps = 50/902 (5%)

Query: 1   MDQFAKETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHEMNNVWN 60
           M   A    PI++E+E++ SYLDYAMSVIVGRALPDVRDGLKPVHRRVL+AM+E+ N WN
Sbjct: 1   MTDLASSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDWN 60

Query: 61  RPFVKCARVVGEVMGKYHPHGDASIYDTLVRMAQDFSLRYTLVDGQGNFGSIDGDGAAAM 120
           +P+ K ARVVG+V+GKYHPHGD+++YDT+VRMAQ FSLRYTLVDGQGNFGSIDGD AAAM
Sbjct: 61  KPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSIDGDAAAAM 120

Query: 121 RYTECRLDKISNELLADIEKETVDFVPNYDGKEKEPSVLPTRIPNLLVNGSSGIAVGMAT 180
           RYTE R++K+++ELLAD+EKETVDFVPNYDG E+ P+VLPT+IPNLLVNG+SGIAVGMAT
Sbjct: 121 RYTEIRMEKLAHELLADLEKETVDFVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMAT 180

Query: 181 NIPPHNITEVINGALHLLANEQCTIDELIELVPAPDFPTGGIIYGVSGVRDGYRTGRGRV 240
           NIPPHN+TEV+ G L L+   + +I++L+E +P PDFPT  II G  G+ + YRTGRG+ 
Sbjct: 181 NIPPHNLTEVVKGCLALIEEPELSIEQLMEYIPGPDFPTAAIINGKKGIEEAYRTGRGKA 240

Query: 241 VMRAKTHFEEYGREGRIAIIVDELPYQVNKKALLERIAELVRDKKLEGISDLRDESDKSG 300
           +MRA+    E    GR  IIV E+PYQVNK  L+E+IAELV+DKK+EGIS LRDESDK G
Sbjct: 241 IMRARAEV-EIEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDG 299

Query: 301 MRVVIELKRGEVPEVVLNNLYKQTQLQDTFGMNMVALVDGQPRLLNLKQLLECFLSHRRE 360
           MR+VIE+KRGEV EVVLNNLY QTQ+Q +FG+NMVAL +GQP+L NLK++LE F+ HRRE
Sbjct: 300 MRIVIEIKRGEVGEVVLNNLYAQTQMQSSFGINMVALANGQPKLFNLKEMLEAFILHRRE 359

Query: 361 VVTRRTVFELRKARERGHVLEGLAVALANIDDFIAIIRAAPTPPIAKAELMSRAWDSSMV 420
           VVTRRTV+ELRKAR+R H+LE LAVALANID  IA+I+A+ +P  AKA L+++ W+   V
Sbjct: 360 VVTRRTVYELRKARDRAHILEALAVALANIDPIIALIKASASPSDAKAGLIAKGWELGTV 419

Query: 421 REMLARAGEANEGGIEAFRPESLPAHYGIQSDGLYKLSDEQAQEILQMRLQRLTGLEQDK 480
           + ML +AG+      +A RPE L   +GI+ DGLY +++ QAQ IL +RL +LTGLE +K
Sbjct: 420 KAMLEKAGD------DAARPEWLEPEFGIR-DGLYFMTEPQAQAILDLRLHKLTGLEHEK 472

Query: 481 IVNEYKDVMAQIADLLDILAKPARVTAIITDELNAAKNDFGIGAKDERRSTIEHNATDLA 540
           I+ EY++++  IA LL IL  P R+  +I +EL      FG    D RR+ I  +A D++
Sbjct: 473 ILQEYEELLEIIAGLLHILRSPERLMEVIKEELELILEQFG----DNRRTEINASAVDIS 528

Query: 541 TEDLITPQDMVVTLSHTGYMKSQPVSEYRAQKRGGRGKQAMATKDDDWIDQLFIANTHDY 600
            EDLI  +D+VVTLSH GY K QP+++Y+AQ+RGG+GK A   KD+D++++L +ANTHD 
Sbjct: 529 LEDLINEEDVVVTLSHLGYAKYQPLTDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDT 588

Query: 601 ILCFSNRGRLYWLKVWEVPQGSRNSRGKPIVNMFPLQDGEKITVILPVSGANRSFPDDRY 660
           ILCFS+ G+LYWLKV+++P  SR +RG+PIVN+ PLQ+GE+IT ILPV    R + + +Y
Sbjct: 589 ILCFSDFGKLYWLKVYQLPLASRQARGRPIVNLLPLQEGERITAILPV----REYEEGKY 644

Query: 661 VFMATSLGTVKKTPLSDFSNPRKAGIIAVDLDEGDFLIGAALTDGQHDVMLFSDGGKAVR 720
           + MATS GTVKKT L+++S PR  GIIAV+L +GD LIG  +TDG  ++MLFSD GK VR
Sbjct: 645 ILMATSHGTVKKTALTEYSRPRSNGIIAVNLKDGDQLIGVDITDGSSEIMLFSDAGKVVR 704

Query: 721 FDEND-------------------------VRPMGRTARGVRGMNLEETQQVIALLVAEN 755
           F E +                         VRPMGR A GVRG+ LEE Q+V++L+V ++
Sbjct: 705 FKEGEEVAVVDENGNPVLDEEGKPQINFKGVRPMGRGATGVRGIALEEGQRVVSLIVPKD 764

Query: 756 EQQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERNGKVVAATLVDSTDEIMLIT 815
           +  ++LT T NGFGKRT + EY    R TKG+++I+ +ERNG VV A  V   DEIMLI+
Sbjct: 765 D-SAILTVTANGFGKRTELAEYPAKSRATKGVVSIKVTERNGPVVGAVQVGENDEIMLIS 823

Query: 816 TGGVLIRTRVSEIREMGRATQGVTLIAVEDGTKLSGLQRVVESD------VEDAVEGDNA 869
             G L+RT    +  +GR TQGVT+I   D   + GLQR+ E        +E+ VEG  A
Sbjct: 824 DKGTLVRTPAIGVSIIGRNTQGVTIIRTADDETVVGLQRIDEIQDDGSEYLEEGVEG--A 881

Query: 870 EG 871
           EG
Sbjct: 882 EG 883