Pairwise Alignments

Query, 881 a.a., DNA gyrase subunit A from Herbaspirillum seropedicae SmR1

Subject, 873 a.a., DNA gyrase, A subunit from Dechlorosoma suillum PS

 Score = 1235 bits (3195), Expect = 0.0
 Identities = 624/886 (70%), Positives = 744/886 (83%), Gaps = 20/886 (2%)

Query: 1   MDQFAKETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHEMNNVWN 60
           MDQFAKET+PISLEEEMR+SYLDYAMSVIVGRALPDVRDGLKPVHRRVL+AMHE+ N WN
Sbjct: 1   MDQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELGNDWN 60

Query: 61  RPFVKCARVVGEVMGKYHPHGDASIYDTLVRMAQDFSLRYTLVDGQGNFGSIDGDGAAAM 120
           + + K AR+VG+V+GKYHPHGD ++YDT+VRMAQDFSLRY LVDGQGNFGS+DGD AAAM
Sbjct: 61  KAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAM 120

Query: 121 RYTECRLDKISNELLADIEKETVDFVPNYDGKEKEPSVLPTRIPNLLVNGSSGIAVGMAT 180
           RYTE R+ +I ++LL DI+KETVDF PNYDG E+EP +LP RIPNLL+NGSSGIAVGMAT
Sbjct: 121 RYTEVRMARIGHQLLEDIDKETVDFGPNYDGSEQEPLILPARIPNLLINGSSGIAVGMAT 180

Query: 181 NIPPHNITEVINGALHLLANEQCTIDELIELVPAPDFPTGGIIYGVSGVRDGYRTGRGRV 240
           NIPPHN+ EV+   L LL N   TIDELI+++PAPDFPT GIIYGV+GVR+GYRTGRGRV
Sbjct: 181 NIPPHNLGEVVAACLALLQNPNLTIDELIDIIPAPDFPTAGIIYGVAGVREGYRTGRGRV 240

Query: 241 VMRAKTHFEEYGREGRIAIIVDELPYQVNKKALLERIAELVRDKKLEGISDLRDESDKSG 300
           VMRAKTH E+  +  R A+I+DELPYQVNK+ LLE+I ELV +K++EGISDLRDESDKSG
Sbjct: 241 VMRAKTHVEDLDKGNRQALIIDELPYQVNKRTLLEKIGELVNEKRIEGISDLRDESDKSG 300

Query: 301 MRVVIELKRGEVPEVVLNNLYKQTQLQDTFGMNMVALVDGQPRLLNLKQLLECFLSHRRE 360
           MRVVIELKRGE+PEVVLNNL+K TQLQDTFGMNMVALVDGQPRLLNLKQ+LECFL+HRRE
Sbjct: 301 MRVVIELKRGEMPEVVLNNLFKMTQLQDTFGMNMVALVDGQPRLLNLKQMLECFLAHRRE 360

Query: 361 VVTRRTVFELRKARERGHVLEGLAVALANIDDFIAIIRAAPTPPIAKAELMSRAWDSSMV 420
           V+ RRTVFELRKARE+ H  EGLAVAL N+D+ IA+I+AAPTP  A+ ELM+R W S+ V
Sbjct: 361 VLNRRTVFELRKAREKAHTQEGLAVALDNVDEIIALIKAAPTPADARRELMARMWVSATV 420

Query: 421 REMLARAGEANEGGIEAFRPESLPAHYGIQSDGLYKLSDEQAQEILQMRLQRLTGLEQDK 480
            EMLARA       ++A RPE +   YG+ + G Y+L++ QAQ IL++RLQRLTGLE+DK
Sbjct: 421 TEMLARA------SLDATRPEGIAPEYGLSAQG-YRLTEAQAQAILELRLQRLTGLERDK 473

Query: 481 IVNEYKDVMAQIADLLDILAKPARVTAIITDELNAAKNDFGIGAKDERRSTIEHNATDLA 540
           IV +YK+++ +IADL+DILA+P RVT II +EL A ++ FG    D+RRS I   A DL 
Sbjct: 474 IVADYKELLEKIADLMDILARPERVTEIIGEELTAIRDQFG----DDRRSEIVAYAQDLG 529

Query: 541 TEDLITPQDMVVTLSHTGYMKSQPVSEYRAQKRGGRGKQAMATKDDDWIDQLFIANTHDY 600
            EDLITPQDMVVTLSHTGY+KSQP+++YRAQ+RGGRGKQA A KDDD++D LF+ANTHDY
Sbjct: 530 IEDLITPQDMVVTLSHTGYIKSQPLADYRAQRRGGRGKQAAAMKDDDFVDHLFVANTHDY 589

Query: 601 ILCFSNRGRLYWLKVWEVPQGSRNSRGKPIVNMFPLQDGEKITVILPVSGANRSFPDDRY 660
           ILCFSNRGR YWLKV+EVPQGSR SRGKPI+NMFP+++GE+I  ILPV    + F DD+Y
Sbjct: 590 ILCFSNRGRCYWLKVYEVPQGSRISRGKPIINMFPMEEGEQINAILPV----KEFSDDKY 645

Query: 661 VFMATSLGTVKKTPLSDFSNPRKAGIIAVDLDEGDFLIGAALTDGQHDVMLFSDGGKAVR 720
           VFM T  GTVKKT L++FSNPRKAGIIAVDLDEGD+LIGA LT GQ D++L SDGGKAV 
Sbjct: 646 VFMCTVQGTVKKTSLANFSNPRKAGIIAVDLDEGDYLIGADLTTGQSDIVLVSDGGKAVW 705

Query: 721 FDENDVRPMGRTARGVRGMNLEETQQVIALLVAENEQQSVLTATENGFGKRTPITEYTRH 780
           F E+ VRPMGR +RGVRGM L+E Q VI+LLVAE+E+++VL ATENG+GKRT + ++ R 
Sbjct: 706 FGEDQVRPMGRQSRGVRGMMLQEGQSVISLLVAESEEETVLVATENGYGKRTRLGDFRRS 765

Query: 781 GRGTKGMIAIQTSERNGKVVAATLVDSTDEIMLITTGGVLIRTRVSEIREMGRATQGVTL 840
            RGT+G++AI  SERNGK+VAA LV   DE+MLITTGGVLIRTRV+EIRE+GRATQGVTL
Sbjct: 766 SRGTQGVMAIAASERNGKIVAAKLVTDADEVMLITTGGVLIRTRVAEIRELGRATQGVTL 825

Query: 841 IAVEDGTKLSGLQRVVESDVE-DAVEGDN-AEG---AGSEAPAAGE 881
           I+++ G KLSGL++V ES+ + DA  GD  A+G    G E  AA E
Sbjct: 826 ISLDAGEKLSGLEKVAESEGDTDAEAGDELADGEMLEGGEDSAASE 871