Pairwise Alignments
Query, 881 a.a., DNA gyrase subunit A from Herbaspirillum seropedicae SmR1
Subject, 812 a.a., DNA gyrase, A subunit (RefSeq) from Desulfovibrio vulgaris Miyazaki F
Score = 763 bits (1971), Expect = 0.0
Identities = 391/857 (45%), Positives = 556/857 (64%), Gaps = 51/857 (5%)
Query: 11 ISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHEMNNVWNRPFVKCARVV 70
+S+E+E+RKSYL+Y++SVI+GRA+PD RDGLKPVHRR+++A HE+ N + RP K ARVV
Sbjct: 5 VSIEKELRKSYLEYSLSVIIGRAIPDARDGLKPVHRRIMFAQHELGNGYTRPPKKSARVV 64
Query: 71 GEVMGKYHPHGDASIYDTLVRMAQDFSLRYTLVDGQGNFGSIDGDGAAAMRYTECRLDKI 130
G+V+GKYHPHGD+++YD LVRMAQDFS+R LVDGQGNFGSIDGD AAAMRYTE R+ ++
Sbjct: 65 GDVIGKYHPHGDSAVYDALVRMAQDFSMRDPLVDGQGNFGSIDGDAAAAMRYTEVRMSRL 124
Query: 131 SNELLADIEKETVDFVPNYDGKEKEPSVLPTRIPNLLVNGSSGIAVGMATNIPPHNITEV 190
+ E LADI+KETVDF PNYD EPSVLPT++PNLL+NGSSGIAVGMATNIPPHN+ E+
Sbjct: 125 AGEFLADIDKETVDFRPNYDNTLLEPSVLPTKVPNLLLNGSSGIAVGMATNIPPHNLGEL 184
Query: 191 INGALHLLANEQCTIDELIELVPAPDFPTGGIIYGVSGVRDGYRTGRGRVVMRAKTHFEE 250
LH++ CT+++L++ V PDFPT G +Y G+ D Y TGRG V +R K EE
Sbjct: 185 CGALLHIVDEPGCTVEDLMDHVKGPDFPTAGFVYAGQGLYDAYTTGRGTVKVRGKVEIEE 244
Query: 251 YGREGRIAIIVDELPYQVNKKALLERIAELVRDKKLEGISDLRDESDKSGMRVVIELKRG 310
++G AI++ E+P+ +NK +L+E+IA LV ++K++G++DLRDESD+ G+RVVI+LKRG
Sbjct: 245 -RKKGLQAIVIREIPFALNKSSLVEKIAALVNERKIDGVADLRDESDRKGIRVVIDLKRG 303
Query: 311 EVPEVVLNNLYKQTQLQDTFGMNMVALVDGQPRLLNLKQLLECFLSHRREVVTRRTVFEL 370
+P++V+N LYK T L+ +FG+NM+A+V +P+LLNLKQ LE FL HRREV+ RRT ++L
Sbjct: 304 TIPDIVVNALYKYTPLESSFGINMLAVVGNRPQLLNLKQALEIFLEHRREVIIRRTRYDL 363
Query: 371 RKARERGHVLEGLAVALANIDDFIAIIRAAPTPPIAKAELMSRAWDSSMVREMLARAGEA 430
RKA R H+LEGL +AL NID+ +A+IRA+ TP AK LM R
Sbjct: 364 RKAEARAHILEGLRIALDNIDEVVALIRASKTPQDAKDALMGR----------------- 406
Query: 431 NEGGIEAFRPESLPAHYGIQSDGLYKLSDEQAQEILQMRLQRLTGLEQDKIVNEYKDVMA 490
+ LS+ QAQ IL MRLQRLT LE +K++ EY +++
Sbjct: 407 ------------------------FTLSEAQAQAILDMRLQRLTNLEHEKLIEEYNELLK 442
Query: 491 QIADLLDILAKPARVTAIITDELNAAKNDFGIGAKDERRSTIEHNATDLATEDLITPQDM 550
+I +L P + ++I +E+ ++ F A R +E + EDLI +D+
Sbjct: 443 KIEFFRSVLENPEVLRSVIREEIGELRDTF---ATKRRTEVLEEELDGIDIEDLIPDEDV 499
Query: 551 VVTLSHTGYMKSQPVSEYRAQKRGGRGKQAMATKDDDWIDQLFIANTHDYILCFSNRGRL 610
V+TLS GY+K + Y+ Q+RGG+G + T +DD++ H Y+L F+N GR+
Sbjct: 500 VITLSRRGYIKRTTLDNYQQQRRGGKGIAGVHTSEDDFVQDFLTTTNHQYLLLFTNHGRM 559
Query: 611 YWLKVWEVPQGSRNSRGKPIVNMFPLQDGEKITVILPVSGANRSFPDDRYVFMATSLGTV 670
+ +KV VP+GSR ++G I N+ L E +T +L V R F +DRY T G V
Sbjct: 560 HQIKVHRVPEGSRTAKGVHIANLVQLDKDELVTNVLTV----REFAEDRYFLFVTRRGMV 615
Query: 671 KKTPLSDFSNPRKAGIIAVDLDEGDFLIGAALTDGQHDVMLFSDGGKAVRFDENDVRPMG 730
K++ S ++ RK G+IAV L D LI D ++L + G A+RF DVRPMG
Sbjct: 616 KRSSASLYAKCRKTGLIAVGLRPDDELIMVREVDEHCHIVLTTGDGMAIRFQCEDVRPMG 675
Query: 731 RTARGVRGMNLEETQQVIA--LLVAENEQQSVLTATENGFGKRTPITEYTRHGRGTKGMI 788
R+A GV+G+ L +V+A +L E+ +++ + NGFGKRT Y RG G+
Sbjct: 676 RSATGVKGIALRGKDRVVACVILAEEDTTSMIMSVSANGFGKRTKADLYRVQSRGGVGVK 735
Query: 789 AIQTSERNGKVVAATLVDSTDEIMLITTGGVLIRTRVSEIREMGRATQGVTLIAVEDGTK 848
+ + + G V+ A V D ++L+T+ ++R ++++R +GRATQGV L+ +++G
Sbjct: 736 NFKVTPKTGDVIGAMPVRDDDALVLLTSTNKILRMGLNDVRSVGRATQGVRLVRLDEGAL 795
Query: 849 LSGLQRVVESDVEDAVE 865
+ G R+ E +V D E
Sbjct: 796 VVGFDRIDEREVVDGEE 812
Score = 71.6 bits (174), Expect = 2e-16
Identities = 60/230 (26%), Positives = 103/230 (44%), Gaps = 10/230 (4%)
Query: 656 PDDRYVFMATSLGTVKKTPLSDFSNPRKAG--IIAVDLDEGDFLIGAALTDGQHDVMLFS 713
PD+ V + G +K+T L ++ R+ G I V E DF+ T ++LF+
Sbjct: 495 PDEDVVITLSRRGYIKRTTLDNYQQQRRGGKGIAGVHTSEDDFVQDFLTTTNHQYLLLFT 554
Query: 714 DGGKAVRFDENDVRPMGRTARGVRGMNL---EETQQVIALLVAEN--EQQSVLTATENGF 768
+ G+ + + V RTA+GV NL ++ + V +L E + L T G
Sbjct: 555 NHGRMHQIKVHRVPEGSRTAKGVHIANLVQLDKDELVTNVLTVREFAEDRYFLFVTRRGM 614
Query: 769 GKRTPITEYTRHGRGTKGMIAIQTSERNGKVVAATLVDSTDEIMLITTGGVLIRTRVSEI 828
KR+ + Y + + G+IA+ + +++ VD I+L T G+ IR + ++
Sbjct: 615 VKRSSASLYAKCRK--TGLIAVGLRP-DDELIMVREVDEHCHIVLTTGDGMAIRFQCEDV 671
Query: 829 REMGRATQGVTLIAVEDGTKLSGLQRVVESDVEDAVEGDNAEGAGSEAPA 878
R MGR+ GV IA+ ++ + E D + +A G G A
Sbjct: 672 RPMGRSATGVKGIALRGKDRVVACVILAEEDTTSMIMSVSANGFGKRTKA 721