Pairwise Alignments

Query, 881 a.a., DNA gyrase subunit A from Herbaspirillum seropedicae SmR1

Subject, 913 a.a., DNA gyrase, A subunit (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  774 bits (1998), Expect = 0.0
 Identities = 433/920 (47%), Positives = 578/920 (62%), Gaps = 81/920 (8%)

Query: 11  ISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHEMNNVWNRPFVKCARVV 70
           IS+ EEM+ SYLDYAMSVIV RA+PD+RDGLKPVHRR+LYAMHE  N   + + K AR V
Sbjct: 25  ISIAEEMKSSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTHEKAYRKSARPV 84

Query: 71  GEVMGKYHPHGDASIYDTLVRMAQDFSLRYTLVDGQGNFGSIDGDGAAAMRYTECRLDKI 130
           G+VMGKYHPHGD++IYD LVRMAQDFS+   L+DGQGNFGS+DGD  AAMRYTE R+DK 
Sbjct: 85  GDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKP 144

Query: 131 SNELLADIEKETVDFVPNYDGKEKEPSVLPTRIPNLLVNGSSGIAVGMATNIPPHNITEV 190
           +  LLADIEKETVDF  NYDGK++EP+VLP R PN+LVNG+ GIAVGMATNIPPHN+ EV
Sbjct: 145 AAALLADIEKETVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 204

Query: 191 INGALHLLANEQCTIDELIELVPAPDFPTGGIIYGVSGVRDGYRTGRGRVVMRAKTHFEE 250
           I+  L L+      +++L++ +PAPDFPTGG I G  G R  Y  GRG V++RAKT  EE
Sbjct: 205 IDATLALIETPDLEVEDLMQYIPAPDFPTGGQILGRGGARKAYLEGRGSVIIRAKTRIEE 264

Query: 251 YGREGRIAIIVDELPYQVNKKALLERIAELVRDKKLEGISDLRDESDKSGMRVVIELKRG 310
             R+ R AI++DE+PYQVNK +++E+IAELVR+K++EGI+ ++DESD+ G+RVVIELKR 
Sbjct: 265 L-RKDRYAIVLDEIPYQVNKSSMIEKIAELVREKRIEGIAHVQDESDRVGVRVVIELKRD 323

Query: 311 EVPEVVLNNLYKQTQLQDTFGMNMVALVDGQPRLLNLKQLLECFLSHRREVVTRRTVFEL 370
             PEVVLN LY+ T +Q +FG NM+AL  G+P  L LK  L  F+S R EVV RRT ++L
Sbjct: 324 ATPEVVLNQLYRFTPMQTSFGCNMLALNGGRPEQLTLKDFLSSFISFREEVVARRTAYDL 383

Query: 371 RKARERGHVLEGLAVALANIDDFIAIIRAAPTPPIAKAELMSRAWDSSMVREMLARAGEA 430
           RKARER HVL GLAVA++N+D+ +A IRA+     A+ +LM+R W ++ + + +    + 
Sbjct: 384 RKARERSHVLCGLAVAVSNVDEVVATIRASADAAEAREKLMTRRWPAADIADYIRLIDD- 442

Query: 431 NEGGIEAFRPESLPAHYGIQSDGLYKLSDEQAQEILQMRLQRLTGLEQDKIVNEYKDVMA 490
                        P H  +  DG Y LS+ QA+ IL +RLQRLT +   ++ +E +++ A
Sbjct: 443 -------------PTH-TMNEDGTYNLSETQARAILDLRLQRLTQIGVKEVTDELQELAA 488

Query: 491 QIADLLDILAKPARVTAIITDELNAAKNDFGIGAKDERRSTIEHNATDLATEDLITPQDM 550
           +I + LDIL   +R+ AII+DEL   K+ F +     RR+ I   + D+  EDLI  +DM
Sbjct: 489 KIQEYLDILRSRSRIMAIISDELREVKDQFAV----PRRTEITDWSGDMEDEDLIEREDM 544

Query: 551 VVTLSHTGYMKSQPVSEYRAQKRGGRGKQAMATKDDDWIDQLFIANTHDYILCFSNRGRL 610
           VVT++  GY+K  P+ E+RAQ+RGG+G   MATK+DD +  LF+ANTH  +L F+  G +
Sbjct: 545 VVTVTSGGYIKRTPLVEFRAQRRGGKGLAGMATKEDDVVTTLFVANTHTPLLVFTTDGMV 604

Query: 611 YWLKVWEVPQGSRNSRGKPIVNMFPLQDGEKITVILPVSGANRSFPDDRYVFMATSLGTV 670
           Y LK W +P G RN+RGK +VN+ P+  G  I  I+PV  A   + D + VF ATS G V
Sbjct: 605 YKLKTWRLPSGGRNARGKALVNVLPIDPGTSIAAIMPVDRAEEDWADLQIVF-ATSAGDV 663

Query: 671 KKTPLSDFSNPRKAGIIAVDLDEGDFLIGAALTDGQHDVMLFSDGGKAVRFDENDVRPM- 729
           ++  LSDF+N  + G IA+ L EG  L+ A +   + DVML +  G+A+RF   DVR   
Sbjct: 664 RRNALSDFTNVMRNGKIAMKLPEGVSLVKARICSEEDDVMLVTALGRAIRFRTTDVRVFK 723

Query: 730 GRTARGVRGMNLEETQQVIALLV---------------------------AENEQQS--- 759
           GR + GVRG+ L E  +V+++ V                           AE+E +    
Sbjct: 724 GRDSTGVRGVRLAEGDRVVSMAVIRHFVADPQERAAYLKMRRAVAGLSEEAESEDEDTVE 783

Query: 760 ------------------VLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERNGKVVA 801
                             +LT TE G GK +   +Y   GRG +G+ A+  + R G +VA
Sbjct: 784 AGQLSPERYAEMSAAEDLILTITEGGTGKISSSHDYPVRGRGGQGVTAMDKAMRGGPLVA 843

Query: 802 ATLVDSTDEIMLITTGGVLIRTRVSEIREMGRATQGVTLIAVEDGTKLSGLQRVVESDVE 861
              V+  D+IML T+ G  IR  V  I    RA  GV +     G          E  V 
Sbjct: 844 CFPVEIDDQIMLATSTGQSIRCPVDGISFRSRAAGGVKVFNTAPG----------EQVVS 893

Query: 862 DAVEGDNAEGAGSE-APAAG 880
            A   D  E  G + AP AG
Sbjct: 894 VAYIADRGEADGDDPAPEAG 913