Pairwise Alignments

Query, 954 a.a., translation initiation factor IF-2 from Herbaspirillum seropedicae SmR1

Subject, 885 a.a., translation initiation factor IF-2 (RefSeq) from Shewanella loihica PV-4

 Score =  904 bits (2335), Expect = 0.0
 Identities = 503/955 (52%), Positives = 651/955 (68%), Gaps = 71/955 (7%)

Query: 1   MASNNVAQFATELKMPADLLLTQLRSAGVEKSSASDSLSKEDKDRLLEHLRRSRGAAPEG 60
           MA   VA+ A E+   AD L+ Q   AG++KS  +D++S+++K +LLE L++  G   + 
Sbjct: 1   MADTTVAKLAEEVGKSADRLVEQFSEAGIKKSK-TDTVSEDEKQKLLEFLKKQHGG--DS 57

Query: 61  EKKKITLTRKETTEIKQADATGKSRTIQVEVRKKRTFIKRDEPGVEETAARAAAPQRDPA 120
              K+TL RK  + +  + + G+S+ I+VEVRKKRTF+KRD       AA A        
Sbjct: 58  APTKMTLQRKSISTLSVSGSGGQSKDIKVEVRKKRTFVKRD------VAAEA-------- 103

Query: 121 IEAQEREQEEARRQAELKAQQERLAQLEAERAAQAKAAELEQQRAREEAEAEAKRQAAEA 180
                        +AE KA+ E          A+AKAA   + +A+ +AEA+AK   AEA
Sbjct: 104 -------------EAEAKAKAE----------AEAKAAAEAEAKAKADAEAKAK---AEA 137

Query: 181 AAAAAEAEKAKAAAPAAAAAAPAPAVDPAAEEKKRAAAEEAKKKAEAAAKEAADRAAAAD 240
            AAA    KA+A A A  AA   PA +  AEEK  A  EEA+     AAKEAA +A A +
Sbjct: 138 EAAAKAKAKAEAEAKAKKAAEGKPAAEETAEEKA-AKVEEARL---LAAKEAAAKAKADE 193

Query: 241 RARKAVEDEVAQIKAMMNAPRRVIKAPEPAPAAAKTSEGTLHKPATAAKPGEKKDDKKPA 300
            A+ A E+                     A   A+ +E    +     K  E   D    
Sbjct: 194 EAKAAAEE---------------------ARRLAEENEKRWAEEERLRKESENSADHHVT 232

Query: 301 VAADKKSIK-SANVSSTWQDDAKKRGTGGMKSRGATGGGGRDGWRAGPKGRRHSHGDDQR 359
            + + ++ + SA+  +  +    ++  GG K       GG++  R G   R   +  +  
Sbjct: 233 TSTEARAAEDSADRDAERRGRRARKPAGGKKEPIGKKRGGKEA-RGGRNNRNQRNAPESM 291

Query: 360 ESNFQVPTEAVVHDVYVPETITVAEVAHKMAVKASEVIKHLMKLGQMVTINQVLDQETAM 419
           +  F  P  AV  DV + ET+TVAE+A KMAVKA+E+IK +MK+G MVTINQVLDQETA 
Sbjct: 292 DHGFNKPAAAVTRDVTIGETVTVAELAQKMAVKATEIIKQMMKMGSMVTINQVLDQETAQ 351

Query: 420 IVVEEMGHRAHAAKLDDPEALLVEGEEHGDAEALPRAPVVTVMGHVDHGKTSLLDYIRRT 479
           +V EEMGH+    + ++ E  ++  +  G+ +  PRAPVVT+MGHVDHGKTSLLDYIRR 
Sbjct: 352 LVAEEMGHKVVLTRENELEHQVL-ADRDGNVKVEPRAPVVTIMGHVDHGKTSLLDYIRRA 410

Query: 480 KVASGEAGGITQHIGAYHVETPRGMITFLDTPGHEAFTAMRARGAKATDIVILVVAADDG 539
           KVASGEAGGITQHIGAYHVET  GMITFLDTPGH AFTAMRARGAKATDIV+LVVAADDG
Sbjct: 411 KVASGEAGGITQHIGAYHVETDNGMITFLDTPGHAAFTAMRARGAKATDIVVLVVAADDG 470

Query: 540 VMPQTKEAIAHAKAGGVPLVVAINKIDKPGANPDRVKQELIAEEVVPEEYGGDAPFIPVS 599
           VMPQT EAI HAKAGGVPL+VA+NKIDKP A+PDRVK EL    V+ E++GG+  F+ VS
Sbjct: 471 VMPQTIEAIQHAKAGGVPLIVAVNKIDKPEADPDRVKSELSQHGVMSEDWGGNNMFVHVS 530

Query: 600 AKTGEGIDSLLENVLLQAEVLELKAPVEVPARGLVIEAKLDKGRGPVATILVQSGTLKRG 659
           AK+GEGID LLE +LL+AEVLELKA  E  A G+V+E+KLDKGRGPVATILVQ GTLK+G
Sbjct: 531 AKSGEGIDELLEGILLEAEVLELKAVREGMAAGVVVESKLDKGRGPVATILVQEGTLKQG 590

Query: 660 DVVLAGSAYGRVRAMLDENGKNIAEAGPSLPVEIQGLTEVPSAGEEVVVMTDERKAREIG 719
           D+VL G  YG+VRAM DENGK+I EAGPS+PVEI GL+ VPSAG+E  V+ DERKARE+ 
Sbjct: 591 DIVLCGLEYGKVRAMKDENGKSITEAGPSIPVEILGLSGVPSAGDEATVVRDERKAREVA 650

Query: 720 LFRQGKFRDVKLAKQQAAKLENMFDQMTEGEVKNLPMIIKTDVQGSQEALVQSLQKLSTN 779
           L+RQGKFRDVKLA+QQ +KLENMF  MTEGEV+ L +++K DVQGS EA+  SL KLST+
Sbjct: 651 LYRQGKFRDVKLARQQKSKLENMFANMTEGEVQELNIVLKADVQGSLEAISDSLNKLSTD 710

Query: 780 EVRVQVVHAAVGGISENDVNLAVASKAVIIGFNTRADASARKLAEASGVDIRYYNIIYDA 839
           EV+V ++ + VGG++E D  LA AS A+++GFN RADA ARK  E+  VD+RYY++IY  
Sbjct: 711 EVKVNIIASGVGGLTETDATLAAASNAIMVGFNVRADAQARKTIESESVDLRYYSVIYHL 770

Query: 840 VDEVKAAMSGMLSPEKREQALGLVEIRQVFVVSKVGSIAGCYVLEGLVKRGSQVRLLRNN 899
           +DEVKAAM GML+PE +++ +GL E+R VF   K+G+IAGC V EG +KR + +R+LR+N
Sbjct: 771 IDEVKAAMGGMLAPEFKQEIIGLAEVRDVFKSPKIGAIAGCMVTEGTIKRSAPIRVLRDN 830

Query: 900 VVVWTGELDSLKRFKDDVKEVKSGFECGLSLKGYNDIEVGDQLEIFEVQEVARTL 954
           VV++ GEL+SL+RFKDDV EV++G ECG+ +K YND++VGDQ+E+FE  E+ARTL
Sbjct: 831 VVIFEGELESLRRFKDDVNEVRNGMECGIGVKNYNDVKVGDQIEVFETVEIARTL 885