Pairwise Alignments

Query, 334 a.a., tRNA pseudouridine synthase B from Herbaspirillum seropedicae SmR1

Subject, 304 a.a., tRNA pseudouridine synthase B (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  148 bits (373), Expect = 2e-40
 Identities = 103/264 (39%), Positives = 138/264 (52%), Gaps = 7/264 (2%)

Query: 35  VPVHGVLLLDKPVGLSSNDALIRAKRMLNAPKAGHTGTLDPFATGLLPLCFGEATKFSQD 94
           V  HG+L+LDKP G SS   + + KR L   K GH GTLDP A G+L +  G ATK S  
Sbjct: 3   VQQHGLLVLDKPSGPSSAQCISKVKR-LGQKKIGHAGTLDPMAGGVLLVLLGHATKISGH 61

Query: 95  LL-EADKTYEAVVHLGVRTDTGDTEGQVLSERPVE-VSVEQIEAAMAQFRGPISQVPPMH 152
           L+ + +K Y   + LG  TDT D EG V +  P   V+   + A +  + G   Q  P +
Sbjct: 62  LMADGEKVYAGTLRLGETTDTWDAEGTVTATAPWHHVTEADVRAIVDSWLGSSEQEVPPY 121

Query: 153 SALKRDGKPLYEYARAGITLEREARNVTIHALELLNYQAPMLRIRVTCSKGTYIRVLGED 212
           SA K  G+PLY+ +RAG     + + V I   E++    P +R RV CS GTYIR L   
Sbjct: 122 SAAKHQGQPLYKLSRAGRETPVKTKTVEISLAEVVWCDLPHVRFRVRCSSGTYIRSLAHS 181

Query: 213 IGEVLGCGAHLNALRRIGVGPLTLEGAVTLESVDA-AGELEARKALLLPVDGLLRSFPAV 271
           +G  LGCGA L  L R    P  L+ A TL++V A  G L  R   ++P+   L  +P V
Sbjct: 182 LGIRLGCGAVLTELTREYSHPFGLDMAHTLDAVLAEPGRLAER---VIPITHALPHWPKV 238

Query: 272 QLSDELARRFLHGQRLPLGKEGVA 295
            +S +      +G  LP   E VA
Sbjct: 239 GISLQQEASVRNGIPLPYQPEMVA 262