Pairwise Alignments

Query, 156 a.a., transcription antitermination protein NusB from Herbaspirillum seropedicae SmR1

Subject, 185 a.a., NusB antitermination factor (NCBI) from Rhodospirillum rubrum S1H

 Score = 44.7 bits (104), Expect = 8e-10
 Identities = 34/102 (33%), Positives = 43/102 (42%), Gaps = 2/102 (1%)

Query: 47  EAHGFDKADAEHFDTLLTGAIRDAEKLRA--GLAPLIDRPIKELSPVEHAALLIGAYELQ 104
           E    +  D E F  L+ GA  +  +L    G +   D P   L PV  A L  G YEL 
Sbjct: 76  EIAALEPPDGELFAMLVRGAHAELARLDEVIGASLSADWPWDRLEPVVRAVLRAGVYELL 135

Query: 105 NHIEIPYKVVINEAVELTKSFGGIDGHKYVNGVLDRFAAQTR 146
                P +V I E V++  +F        VN VLDR A   R
Sbjct: 136 ERQRTPPRVAIKEYVDIAAAFYSGAEPGMVNAVLDRVARSAR 177