Pairwise Alignments

Query, 156 a.a., transcription antitermination protein NusB from Herbaspirillum seropedicae SmR1

Subject, 159 a.a., NusB antitermination factor (RefSeq) from Dinoroseobacter shibae DFL-12

 Score = 43.9 bits (102), Expect = 1e-09
 Identities = 45/146 (30%), Positives = 65/146 (44%), Gaps = 16/146 (10%)

Query: 14  RTPRHRAREFALQGLYQWLLNHEDAGAIEAHIREAHGF-----DKADAEHFDTLLTGAIR 68
           R  +  AR +A+Q L+Q     + A ++     E H F     +   AE   TL    + 
Sbjct: 12  RQAKSAARLYAVQALFQMEAAGQSADSVIREF-EDHRFGAIYEEGEMAEGHVTLFRTTVG 70

Query: 69  DAEKLRAGLAPLIDR------PIKELSPVEHAALLIGAYELQNHIEIPYKVVINEAVELT 122
           +A   +A +  L DR      PI  + P   A       EL    + P KVVINE V+L 
Sbjct: 71  EAVNWQAKIDQLTDRALATAWPIDRIDPTLRALFRAAGAELVR-ADTPPKVVINEYVDLA 129

Query: 123 KSFGGIDGH--KYVNGVLDRFAAQTR 146
           ++F   DG   K+VN VLD  A + +
Sbjct: 130 RAFFP-DGKEPKFVNAVLDHMAREAK 154