Pairwise Alignments

Query, 603 a.a., hypothetical protein from Herbaspirillum seropedicae SmR1

Subject, 595 a.a., TPR repeat (NCBI) from Rhodospirillum rubrum S1H

 Score =  226 bits (575), Expect = 3e-63
 Identities = 200/608 (32%), Positives = 277/608 (45%), Gaps = 45/608 (7%)

Query: 11  LLQKALALHQKGQLAPAEELYKKVLVKLPRHFEANYLYGMLKLHQEDWETAEAQLAKAIE 70
           L+ +A AL + G  A A +LY+ VL + P H  A    G + L       A   L  A+ 
Sbjct: 14  LIARADALREGGAPAEARDLYRLVLDRHPGHGPALAGLGRILLGLGQPTAALESLGAAVA 73

Query: 71  LNPDHLDTYFDHAGALAHLGRDDEAVARYD-LVLTVNADFVEALLARGAALRRLGRNREA 129
            +P  LD   D A ALA   R  EA++  + L  T  A     L  R   L  LGR  +A
Sbjct: 74  ADPTRLDWLADLAVALAGARRPAEALSAAEGLPATAGA-----LGFRADRLEELGRRDQA 128

Query: 130 LADLERATALAPDNADAWFQRGNVLHDSYAYGDARESYERAVALRPDFIEAWFNLGNTCK 189
           +A L+ A    PD A+   ++G +L  +     A   +   VALRP    AW +LG    
Sbjct: 129 IALLDDALRRHPDEAELHRRQGVLLRRAGRAAQAIAPWRALVALRPGDAAAWSSLGAGLG 188

Query: 190 DGNQLDQALRAYDRALEVQPDFFEAISNRGYVLFKMQRPAEALQAYDRALALDERAPDLW 249
           +    ++A +A  RA+ +  D  +   N  + L +  R  +AL   D A+A         
Sbjct: 189 ESGLDEEAEKALRRAVALAADEPDWTYNLAHFLIERDRLEDALPLLDAAVARAPERAHYH 248

Query: 250 FNRGSTLEQLYRFEEASESYRRAKALKPDAGSATWNEALMQLRQGDFVNGWKGFETRWAT 309
            N G     L   + A  ++R+A AL PD   A ++ A   L  G +  GW   E RW  
Sbjct: 249 TNLGVCRLGLGDIKGAIAAHRQALALDPDEPEARYDLAWALLLAGAWEEGWAAHEARWRM 308

Query: 310 EQMRGQQR------QFMQPLWLGEQPLEGKTILLHAEQGFGDTLQFVRYA-PLLAARG-A 361
            +  G++        +  PLW G+    G+T+LLHAEQGFGD+L   R   P LA  G A
Sbjct: 309 GRFTGRRAAGPAPTDWPMPLWDGQPLGPGRTLLLHAEQGFGDSLMMSRLIIPALARAGDA 368

Query: 362 RVILEVQPALTRQLAGL------PGVTQVIGTDHFMRPPFDFHCPLMSLPLACKTFSEAD 415
           + I+E  P+L   LA        P V  V   +    P  D H PLMSLP      SE  
Sbjct: 369 QGIIECPPSLVGLLAQSLGPALGPAVRVVAQAES--PPAADAHLPLMSLPHRLGVDSET- 425

Query: 416 IPRAPYLLPEASSWA-AWHQRLPRNRALRVGLVWAGSSAQTHPDAVRIDGERSLPFATLA 474
                  +P    W  A     P +   RVGLVWAG          R+D  RS P   L 
Sbjct: 426 -------IPGPDRWLRAEPAPRPPSSPPRVGLVWAGDPGN------RMDRLRSCPATALR 472

Query: 475 PLVELAREHAA-LEFYSLQVGQDAVAQLHAHPLASLVRDCSPELHDFAETGALLANLDLL 533
           PL +  ++    + +  LQ+G  A        L  L    +P   DFA T  ++A LDL+
Sbjct: 473 PLFDRVKDAGLDIAWTGLQLGPPAA------DLPDLPAALAPG-GDFAATARVVAALDLV 525

Query: 534 ITVDTSVCHLAGALGRPVWLLNRHNGCWRWQVEREDSPWYGGMTIFGQRTAGQWDEVIAR 593
           I VDT+V HLAG LG   W++  +   +RW ++R+DSPWY    +F Q   G W  VIA+
Sbjct: 526 IGVDTAVIHLAGGLGVETWVMLAYVPDYRWMMDRDDSPWYPSARLFRQSRRGDWRGVIAQ 585

Query: 594 VRAALQQQ 601
           V AAL ++
Sbjct: 586 VAAALTKR 593



 Score = 40.8 bits (94), Expect = 2e-07
 Identities = 49/170 (28%), Positives = 68/170 (40%), Gaps = 24/170 (14%)

Query: 145 DAWFQRGNVLHDSYAYGDARESYERAVALRPDFIEAWFNLGNTCKDGNQLDQALRAYDRA 204
           D+   R + L +  A  +AR+ Y   +   P    A   LG       Q   AL +   A
Sbjct: 12  DSLIARADALREGGAPAEARDLYRLVLDRHPGHGPALAGLGRILLGLGQPTAALESLGAA 71

Query: 205 LEVQPDFFEAISNRGYVLFKMQRPAEALQAYDRALALDERAPDLWFNRGSTLEQLYRFEE 264
           +   P   + +++    L   +RPAEAL A   A  L   A  L F R   LE+L R ++
Sbjct: 72  VAADPTRLDWLADLAVALAGARRPAEALSA---AEGLPATAGALGF-RADRLEELGRRDQ 127

Query: 265 A--------------SESYRRAKALKPDAGSAT-----WNEALMQLRQGD 295
           A              +E +RR   L   AG A      W  AL+ LR GD
Sbjct: 128 AIALLDDALRRHPDEAELHRRQGVLLRRAGRAAQAIAPW-RALVALRPGD 176