Pairwise Alignments

Query, 487 a.a., DEAD/DEAH box helicase from Herbaspirillum seropedicae SmR1

Subject, 533 a.a., DEAD-box ATP dependent DNA helicase (RefSeq) from Shewanella amazonensis SB2B

 Score =  420 bits (1079), Expect = e-122
 Identities = 233/467 (49%), Positives = 304/467 (65%), Gaps = 52/467 (11%)

Query: 18  FEDFGLSPDILKALAEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQR 77
           F   GLS  ILKAL  +GY  P+PIQAQAIPVVL+GRD++ AAQTGTGKTAGF+LP+++ 
Sbjct: 3   FASLGLSAPILKALDHKGYKTPSPIQAQAIPVVLEGRDLLAAAQTGTGKTAGFTLPLLEL 62

Query: 78  LLQHASHSASPARHPVRALILTPTRELADQVADNVAAYCRFTPLRSTVVFGGVDMAPQTA 137
           L Q  +  A P +  VRALILTPTRELA Q+ADN+ AY ++ PL+STVVFGGV + PQ  
Sbjct: 63  LSQ--TQKAGPKQ--VRALILTPTRELAAQIADNITAYSKYLPLKSTVVFGGVGIGPQIT 118

Query: 138 ILRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRMLDMGFLPDLQRIINLLPKQ 197
            LR G++I++ATPGRLLD  QQ  V+    +ILV+DEADRMLDMGF+ D++RI+ LLP +
Sbjct: 119 TLRRGIDILVATPGRLLDLHQQNAVSFHGLEILVLDEADRMLDMGFIHDIKRILKLLPAK 178

Query: 198 RQNLLFSATFSPEIKKLAASFQNNPVTIEVARSNATAENVTQTIYKVEEAAKADAVSFII 257
           RQNLLFSATFSPEI+ LA    +N   + V   N+ AE+V Q I  V++  K   ++ + 
Sbjct: 179 RQNLLFSATFSPEIRTLAHGLLHNAAEVSVTPRNSAAESVKQWIVPVDKNQKPALLAELT 238

Query: 258 RQRELKQVIVFSNTKIGASRLARTLVAEGVKASAIHGDKTQSERMAALEAFKQGQIEVLV 317
           R    +QV+VF  TK GA+RL R + AEG+KA+AIHG+K+Q+ R  AL  FK+G I +L+
Sbjct: 239 RFYRWQQVLVFCRTKHGANRLVRQMDAEGIKAAAIHGNKSQNARTQALADFKRGAIRMLI 298

Query: 318 ATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGASGDAISLFCDKDDRLLTDI 377
           ATD+AARG+DI+ELP V+N++LP+  EDYVHRIGRTGRAGASG+A SL C+++ + L DI
Sbjct: 299 ATDIAARGIDISELPNVVNFELPHVPEDYVHRIGRTGRAGASGEAASLVCNEEAKQLRDI 358

Query: 378 EKLIKKKFERAELTGFAP------------------------------------------ 395
           E+LIK+   R E  GF P                                          
Sbjct: 359 ERLIKQSLPRKEFVGFEPVHGLPPSENQGKSKPGGSKQGAKPGNKSQGRKPQGQSRNAQP 418

Query: 396 ------RARHERSDRAERGERSERGERSDRGDRSDRGERSRSSREGG 436
                 RA+ ERS + +   RSE+  R  RG+   R ER  S+R  G
Sbjct: 419 KQRQGSRAQEERSQQDKNPSRSEQPRRERRGNDQARSERPHSARAHG 465