Pairwise Alignments

Query, 487 a.a., DEAD/DEAH box helicase from Herbaspirillum seropedicae SmR1

Subject, 432 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  369 bits (946), Expect = e-106
 Identities = 193/404 (47%), Positives = 269/404 (66%), Gaps = 10/404 (2%)

Query: 16  VRFEDFGLSPDILKALAEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPII 75
           +RFE F  +P+IL A++E GY   TPIQ +AIP + +G+DV+ +AQTGTGKTA F+LPI+
Sbjct: 1   MRFESFSFAPEILHAISECGYQKMTPIQKEAIPAIRRGQDVLASAQTGTGKTAAFALPIL 60

Query: 76  QRLLQHASHSASPARHPVRALILTPTRELADQVADNVAAYCRFTPLRSTVVFGGVDMAPQ 135
           Q++    S +    R   RALIL PTREL  QVADN+  Y R+ P+    V+GGV M  Q
Sbjct: 61  QKMFDSPSDTQ---RSNTRALILAPTRELVAQVADNIKQYSRYLPISVLTVYGGVKMDTQ 117

Query: 136 TAILRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRMLDMGFLPDLQRIINLLP 195
            A ++ G +I++ATPGRLL+H+Q   +NLS    LV+DEADRMLDMGF+ D+Q+I+  + 
Sbjct: 118 AAKVKKGADIIVATPGRLLEHLQACNLNLSNVDFLVLDEADRMLDMGFITDIQKILQQVN 177

Query: 196 KQRQNLLFSATFSPEIKKLAASFQNNPVTIEVARSNATAENVTQTIYKVEEAAKADAVSF 255
           + RQNLLFSATFS  +K+LA      P  I V + N TA  V+Q +Y VE+  K + +S 
Sbjct: 178 RDRQNLLFSATFSSAVKQLANEMLVKPKLIAVDKQNTTAVTVSQVVYPVEQRRKRELLSE 237

Query: 256 IIRQRELKQVIVFSNTKIGASRLARTLVAEGVKASAIHGDKTQSERMAALEAFKQGQIEV 315
           +I ++  +QV+VF+ T+  A  L + L  +G+ ++ +H +K Q  R  AL  FK+G++  
Sbjct: 238 LIGKKNWQQVLVFTATREAADVLVKELNLDGIPSAVVHSEKAQGNRRRALREFKEGKVRA 297

Query: 316 LVATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGASGDAISLFCDKDDRLLT 375
           LVAT+VAARGLDI EL  V+N+DLP+ AEDYVHRIGRTGRAG +G AISL   +++R L 
Sbjct: 298 LVATEVAARGLDIPELEYVVNFDLPFLAEDYVHRIGRTGRAGRTGVAISLVSREEERTLA 357

Query: 376 DIEKLIKKKFERAELTGFAPRAR-------HERSDRAERGERSE 412
           DIEKLI  K  R  + G+   +R        +R   A++ +RS+
Sbjct: 358 DIEKLIGNKIRRITIPGYEVGSRDLLIKQLQKRRSFAKKQQRSD 401