Pairwise Alignments

Query, 487 a.a., DEAD/DEAH box helicase from Herbaspirillum seropedicae SmR1

Subject, 474 a.a., DNA/RNA helicase, superfamily II from Dechlorosoma suillum PS

 Score =  457 bits (1176), Expect = e-133
 Identities = 249/484 (51%), Positives = 326/484 (67%), Gaps = 22/484 (4%)

Query: 16  VRFEDFGLSPDILKALAEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPII 75
           +RF++ GL+P+ILKA+ E GY   TPIQ QAIP+VLQG+D+   AQTGTGKTA F+LP+I
Sbjct: 1   MRFDELGLAPEILKAVTEMGYAEATPIQQQAIPLVLQGKDLKACAQTGTGKTAAFTLPLI 60

Query: 76  QRLLQHASHSASPARHPVRALILTPTRELADQVADNVAAYCRFTPLRSTVVFGGVDMAPQ 135
           QRLL   + S SPA+HPVRAL+L PTRELA QV ++V +Y ++T  RS  +FGGVD+ PQ
Sbjct: 61  QRLLHLDTASPSPAKHPVRALMLAPTRELALQVYESVKSYTKYTHFRSICLFGGVDIKPQ 120

Query: 136 TAILRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRMLDMGFLPDLQRIINLLP 195
            A ++ GVE V+ATPGRLLDHV+QK+V+ +Q Q LV+DEADRMLDMGF+PD+QRI+N+LP
Sbjct: 121 IAEMKKGVEFVVATPGRLLDHVEQKSVSFNQVQALVLDEADRMLDMGFIPDIQRILNMLP 180

Query: 196 KQRQNLLFSATFSPEIKKLAASFQNNPVTIEVARSNATAENVTQTIYKVEEAAKADAVSF 255
           K RQ+LLFSATFS EI++LA +   +P+ +EVAR N   + +T  ++ V E  K D +  
Sbjct: 181 KTRQSLLFSATFSNEIQRLADTMLQSPILVEVARRNQVNDTITHRVHPVAETRKKDLLIK 240

Query: 256 IIRQRELKQVIVFSNTKIGASRLARTLVAEGVKASAIHGDKTQSERMAALEAFKQGQIEV 315
           ++R  E+ Q +VF  TK G  RLAR L   G+ A +IHGDK+Q+ER+ AL+AFK G  +V
Sbjct: 241 LLRSGEITQTLVFMRTKQGCGRLARELERAGIAADSIHGDKSQNERIKALDAFKNGGCKV 300

Query: 316 LVATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGASGDAISLFCDKDDRLLT 375
           LVATDVAARGLDI  LP VIN++LP+  EDYVHRIGRTGRAG  G+AISL C  +   L 
Sbjct: 301 LVATDVAARGLDIDHLPYVINFELPHTPEDYVHRIGRTGRAGRQGNAISLVCAHEVGYLA 360

Query: 376 DIEKLIKKKFERAELTGFAPRARHE---RSDRAERGERSERGERSDRGDRSDRGERSRSS 432
           DIEKLIK + E+  + GF P   +E    S +  R   +    +   G      +R+   
Sbjct: 361 DIEKLIKMQIEQVAVAGFEPEMDYEYPPGSGKKRRAHETHAPSQPVAGRSKPPVKRNNMI 420

Query: 433 REGGAAPMRREKVDPWFLKPYEPSAV-ETVSTKPELAKN-------NRP-KAKVAALLGG 483
            + G            F KPYEP A   TV +K E A         ++P K  VAALLGG
Sbjct: 421 AKDGFD----------FSKPYEPKAAPATVPSKEEAAHTPVGKPDPHKPKKPMVAALLGG 470

Query: 484 MPKR 487
           + ++
Sbjct: 471 LGRK 474