Pairwise Alignments

Query, 487 a.a., DEAD/DEAH box helicase from Herbaspirillum seropedicae SmR1

Subject, 473 a.a., DNA/RNA helicase, superfamily II from Dechlorosoma suillum PS

 Score =  421 bits (1082), Expect = e-122
 Identities = 231/426 (54%), Positives = 297/426 (69%), Gaps = 11/426 (2%)

Query: 18  FEDFGLSPDILKALAEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQR 77
           F D GL  +IL+A+AEQGY  PTPIQ QAIP VL GRD+M  AQTGTGKTAGF+LPI+Q 
Sbjct: 3   FTDLGLKAEILRAIAEQGYTEPTPIQQQAIPAVLAGRDLMACAQTGTGKTAGFTLPILQ- 61

Query: 78  LLQHASHSASP----ARHPVRALILTPTRELADQVADNVAAYCRFTPLRSTVVFGGVDMA 133
           LL  A    SP    AR P R LIL PTRELA QV ++V  Y +  PL+S  +FGGV M 
Sbjct: 62  LLSQAQAGESPLNRLARKP-RVLILAPTRELALQVEESVRTYGQHLPLKSMSMFGGVGMN 120

Query: 134 PQTAILRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRMLDMGFLPDLQRIINL 193
           PQ A L+ GV+I++A PGRLLDH+ Q+T++LS  +ILV+DEADRMLDMGF+ D+++I+ L
Sbjct: 121 PQIAALKRGVDILVACPGRLLDHINQRTLDLSGIEILVLDEADRMLDMGFIRDIRKILAL 180

Query: 194 LPK--QRQNLLFSATFSPEIKKLAASFQNNPVTIEVARSNATAENVTQTIYKVEEAAKAD 251
           LP   +RQNLLFSATFS EIK+LA SF ++P +IEVAR N T E V+Q +  V+   K D
Sbjct: 181 LPPNGKRQNLLFSATFSDEIKELARSFLHDPQSIEVARRNTTVETVSQKVIHVDREKKKD 240

Query: 252 AVSFIIRQRELKQVIVFSNTKIGASRLARTLVAEGVKASAIHGDKTQSERMAALEAFKQG 311
            +  +   R   QV++F+ TK GA  L+R L  EG++++A+HG+KTQ  R+ AL  FK+G
Sbjct: 241 VLLHLFENRGWNQVLIFTRTKHGADALSRRLDKEGIRSAALHGNKTQGARVRALTEFKEG 300

Query: 312 QIEVLVATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGASGDAISLFCDKDD 371
           ++  LVATD+AARG+DI +LP V+NY+LP  AEDYVHRIGRTGRAGA G+AISL C  + 
Sbjct: 301 KLVALVATDIAARGIDIDQLPYVVNYELPNVAEDYVHRIGRTGRAGAEGEAISLVCHDER 360

Query: 372 RLLTDIEKLIKKKFERAELTGFAPRARHERSDRAER-GERSERGERSDRGDRSDRGERSR 430
             L  IE+LIKK  E+  L GF P A    +    R G+R  +G+R  +G R  +G+  R
Sbjct: 361 DNLRSIERLIKKDLEKEVLPGFEPSANPTPAPPQNRGGQRQGQGQR--QGQRQGQGQPGR 418

Query: 431 SSREGG 436
           S    G
Sbjct: 419 SFGNNG 424