Pairwise Alignments

Query, 487 a.a., DEAD/DEAH box helicase from Herbaspirillum seropedicae SmR1

Subject, 443 a.a., DNA/RNA helicase, superfamily II from Dechlorosoma suillum PS

 Score =  373 bits (958), Expect = e-108
 Identities = 209/420 (49%), Positives = 267/420 (63%), Gaps = 7/420 (1%)

Query: 18  FEDFGLSPDILKALAEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQR 77
           F D  L P +L+AL   GY  PTP+Q +AIP VL G D+M AAQTGTGKTA F+LP++QR
Sbjct: 3   FADLDLVPPLLEALDVLGYQTPTPVQEKAIPAVLAGGDLMAAAQTGTGKTASFALPLLQR 62

Query: 78  LLQHASHSASP-ARHPVRALILTPTRELADQVADNVAAYCRFTPLRSTVVFGGVDMAPQT 136
           L    +H   P A +  RALIL PTRELA QV D+  AY +F  LRS  V+GGV + PQ 
Sbjct: 63  L----AHDPEPTASNSTRALILVPTRELAQQVCDSFVAYGQFLVLRSYAVYGGVSINPQM 118

Query: 137 AILRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRMLDMGFLPDLQRIINLLPK 196
             LR GV+I++ATPGRLLD  +Q  V   Q + LV+DEADRMLD+GF  +L  +  LLPK
Sbjct: 119 MKLRKGVDILVATPGRLLDLHRQNAVRFDQVRTLVLDEADRMLDLGFARELNALFALLPK 178

Query: 197 QRQNLLFSATFSPEIKKLAASFQNNPVTIEVARSNATAENVTQTIYKVEEAAKADAVSFI 256
           QRQ LLFSATFS  I+ +A      P++IE AR NATA  + Q +  V++  K+     +
Sbjct: 179 QRQTLLFSATFSDAIRSMADQLLKKPLSIETARPNATARGIKQWVVPVDKKRKSALFCHL 238

Query: 257 IRQRELKQVIVFSNTKIGASRLARTLVAEGVKASAIHGDKTQSERMAALEAFKQGQIEVL 316
            + ++  QV+VF  T+ G   L  TL A+G+ A +IHGDK Q  R+ ALE+FK GQ+ VL
Sbjct: 239 YKHKKWDQVLVFVKTRKGVDELVETLTAKGIAAESIHGDKPQPARLRALESFKAGQVRVL 298

Query: 317 VATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGASGDAISLFCDKDDRLLTD 376
           VATDVA+RGLDI +LP V+N+DLP   EDYVHRIGRT RAGASG+A+SL C  +  LL  
Sbjct: 299 VATDVASRGLDIDDLPRVVNFDLPIVPEDYVHRIGRTARAGASGEAVSLVCADEVNLLGA 358

Query: 377 IEKLIKKKFERAELTGFAPRARHERSDRAERGERSERGERSDRGDRSDRGERSRSSREGG 436
           IE LI +   R E  GF P   H   +    G+  ++ ++       D G  S  SR  G
Sbjct: 359 IEVLIGQPLSRIEQHGFEP--DHRVPETGPAGQVIKKPKKPKMPKHLDYGIGSGPSRGKG 416