Pairwise Alignments

Query, 487 a.a., DEAD/DEAH box helicase from Herbaspirillum seropedicae SmR1

Subject, 578 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella sp. ANA-3

 Score =  406 bits (1043), Expect = e-117
 Identities = 222/425 (52%), Positives = 291/425 (68%), Gaps = 7/425 (1%)

Query: 18  FEDFGLSPDILKALAEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQR 77
           F   GLS  I KA+ EQGY  P+PIQAQAIP VL G+DVM AAQTGTGKTAGF+LP+++ 
Sbjct: 3   FSSLGLSAPIQKAVTEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLEL 62

Query: 78  LLQHASHSASPARHPVRALILTPTRELADQVADNVAAYCRFTPLRSTVVFGGVDMAPQTA 137
           L +     A      +RAL+LTPTRELA QV+++V  Y ++ PLRS VVFGGV + PQ  
Sbjct: 63  LSKGNKAKAGQ----IRALVLTPTRELAAQVSESVETYGKYLPLRSAVVFGGVPINPQIQ 118

Query: 138 ILRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRMLDMGFLPDLQRIINLLPKQ 197
            LR GV++++ATPGRLLD  QQK V  +Q ++LV+DEADRMLDMGF+ D+++I+ +LP +
Sbjct: 119 KLRHGVDVLVATPGRLLDLEQQKAVKFNQLEVLVLDEADRMLDMGFIRDIKKILAMLPAK 178

Query: 198 RQNLLFSATFSPEIKKLAASFQNNPVTIEVARSNATAENVTQTIYKVEEAAKADAVSFII 257
           RQNL+FSATFS EI++LA    N PV I V   NA A  V Q I  V++  K+  +  +I
Sbjct: 179 RQNLMFSATFSDEIRELAKGLVNQPVEISVTPRNAAANTVKQWICPVDKNQKSALLIQLI 238

Query: 258 RQRELKQVIVFSNTKIGASRLARTLVAEGVKASAIHGDKTQSERMAALEAFKQGQIEVLV 317
           +Q + +QV+VFS TK GA+RLA++L+   + A+AIHG+K+Q  R  AL  FK G++ VLV
Sbjct: 239 KQEDWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVLV 298

Query: 318 ATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGASGDAISLFCDKDDRLLTDI 377
           ATD+AARGLDI +LP V+N+DLP   EDYVHRIGRTGRAGA G A+SL   ++ +LL DI
Sbjct: 299 ATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGALGQAVSLVSSEETKLLRDI 358

Query: 378 EKLIKKKFERAELTGFAP-RARHERSDRAERGERSERGERSDRGDRS--DRGERSRSSRE 434
           E+LI +  ER E+ GF+P     E +  A   E   +   S R  RS      R+ S R+
Sbjct: 359 ERLINRVLERQEVEGFSPVHTLPESTLNAHGKENKIKAVASQRKHRSAGKPAPRAGSGRD 418

Query: 435 GGAAP 439
           G   P
Sbjct: 419 GRKTP 423